Subfamily Intron_gpII-B_CL1

Download the aligments for this family. (.stk)

RNA Shape

Level1

((((()(()))(((()((()()((())))))))))(()(())))((((()()()()))()()(()))(((()))))

Level2

(((()())(()(()()())))(()()))(((()()()())()()())())

Consensus Secondary Structure representation

>predicted reference Intron_gpII-B_CL1

GUGCGACAUGAAAGUCGCUAAAUGGUUAUAUCAUGGACUUCGCCGUAAAAAGGCCAUUCUAUUACCAUUAGGCAGUAACCCUACUGAGAAAUGCGUAAUUGGCAACGGUCGGGUGUGAGCUCCGGCAAUAGACCGGCGAAGCUGACAGGACAGUGAGGCAAAACUGAACAUACUGCCAAGCAUCAAUGGCGGAUUAAGGAGCUAGGCUAGGAUGGUAUGGUGAACGUAAUGUGAACUGCUGAUAAACAUCGUUAAAUGCGAACAAGCGAAAGUCGGCUGAUAGCGCUUGAACCAAAAUGGUAUGUGGUCAGGUUAUGUCAAUCUGUAAUGUCGGGAUACAUGGACAUAUGACCACCGGUGUAAAGGCAGCACCUAACCCAUCCGUAUGUGUCAUAGAUAUGGAACUUGGUAAGCCCGUAUCGUCCCCUUAAUCAACAGGCAGGCAAACCGUAAGGAAUGCUGUUGGCGGUGCGGGUAAAGGAGGUUGGAAAAAGCGAAUGCCGGCCUGUAAUGGGCCGGAUAGAGGGUUGAAAAUUCACCCCAAACGCGAAAGCGUGCAGACUUCCAACUGGUCUUUUCAUCGCGAGAAAACCUGUAAUAAACUGUAGAUUUAAAAUUUGAAGGGAGAAGAGCAAGGAAUUAUCCCUGGUUGGAUCGUGAAGCAUCAGAAUGAUUAUACACUCGGUCAAAGGUAGUAAUUAAGGCUUGAGCCGUAUGCGGGGAAACUCGCACGUACGGUUCUUAGGGGGCGGGGGGGGCAGUAAUGCCCCCGUUCCUACCCGAC

.(.(..((.............................................(......(.......).................................................................................(..(...)................................).............)(....(((((...((((.((.....))...(((((......(((((...........(((((.................))))).(((.....)))..((((((.(..(((...................)))......)....)))))))))))....)))))))))....)))))......................).)))...((((((((((((..............)...(((..((....))..))).....)))))))))))..)(((.((((((....((....)(((((((.....)))))))......(...................)..(........)...).)))))).(...............................).....................................................................................................(....)(((((((((((....))))))..))))).))...(((((......(..((....)).).......)).)))..)