Subfamily Intron_gpII-B_BactD

Download the aligments for this family. (.stk)

RNA Shape

Level1

((((()(())(((()))())((()(((()(())))))))))(((((()))))))((((())))(()(()))(()))

Level2

((()()(()())(()(()())))())(()(()())())

Consensus Secondary Structure representation

>predicted reference Intron_gpII-B_BactD

GUGUGUCACGAACGCAGGAGAGUAAAGCUGUGUAUGCUGUACAGAAGAUGGGGGUAGGCCCCCCGGAGUCGGCUUGCAGGAGCGGGCUCCAAACCACCCGGUGCUGCUGCGGUCAAAAGCCGUGGUGGUGAGCGACCGGGGAAAAGUCAUCCGAUGAGGGUGUCAGGUGAGUAUCGAGAAGAUGAGCGAAAGCAAACCGCCGAUGACGCAUCGUUAAUGCCAAGAUGCUGUCGAAACCGAGGUUGUGUAGUUGCUUCGGGACAAGCCGGGGCGAUACCUGUUUACGGACCCGGCGGCAGCCGGUGUAUAGGCGGCAUGAUCUCGAUACAGGCUUUUGUACGGAACGUGAGAACCUGUUGCUCCAGUUGUAAGGGAAAAUGACCCAAGUGGCAGACACCACGAGGAAAGAAUACCGAUGCUGGAGUACAGGGGCGGAGCCGCCCGUAGUAGUGAUGAAGUCCCUGUAAUGGGGAUGGAGCGAAGGGGCGGCGUUAUCUUGCUCGAUGCAAUGCGGUCAACCUGCAAAGGGGAUGAGCAGCAUCCGUGAGCCGUAUGACGCGAGAGUGUCACGUACGGUUCUGCGAGAGGCUGGGGGGGAAGUUCCCCCGGUCUACUCACC

..(..((((..........................((((((((((((..(((((.....)))))((((((.((((....)))).))))))..(((.(((((((((((((((((.....))))))))))....).)))))).......((...........))...)))..(((((((((..(((.((....))...(((((......((((((.............((((((....(((((.............))))).....((((((.((...........))..))))))))))))))))))...))))))))..)))))))))...)))))))))))..)))))...(((.....((.........((.........((..(((.......).))..))........)).......))....)))..)((.(((((((......((......((((((.....))))))...))....))))))).........................)..((.......).................((((((((((((((....))))))..)))))))).).(((((((((((((.......)))))))))).)))..)