Subfamily Intron_gpII-A_BactA

Download the aligments for this family. (.stk)

RNA Shape

Level1

((()()((())((())))((()(((((()))((())))()))))))()(())()(())(())

Level2

(()()(()())(()((()())())))()()()()()

Consensus Secondary Structure representation

>predicted reference Intron_gpII-A_BactA

GUGCGCCCGGAGUUCAAGUAGGGGCGCGUAUGUUCUGGAAUGUAGAGUCAUAAGGUCUACACCCAACACUCUCCGUGCUUCAAGGGAGAAGAACCGAGCGGCGGUGACCUGCGGAAAGCUGGCAGGGUGACGUAACCCGCGAAAACGGGGAUUGAGGCGAAGUCAUUAAGCCAAGAUGUUCCUCAAGGUUAAGUAUUGAAAGGUUGAAGAACAUGAACCCGUUAAUCCGCCUCUGAGGGUUGAAAUGUCACCACGGCCUACAUGGUCUGACAGGCCGUAUGCAAAAGAGCUGAGUGAUAUGUAAGCACUCCGGUCGAAGGUGGUUGGACAUGUAUGCAGUUCACUUGGGAGCAGGGCUAGCAGCCAGCCUUGCUAUUUGUGCCAACUUGCGGCAAGCAAGGAUAAAGAGUGCGACGGGCAGCCUCGCCAAUACGCUUGAGUCCAGAAAGUUGAACCGGGGAAGGUCAGCCGGAAUAUAAGGGAUAGCCCUGAUGUCGCCGCAGGCUGGCGGAGCUCCCGUAGUAGUCCGCGAUGGGGAAAGCCCAUUACAUGGCGAAGGGGAGCAGUUUUAAUGUUCAGCAAAACGGAGAGCCGUAUGCGCUGAAAGGUGCACGUACGGUUCGGGGAGGAGAGCGGGCAAAUAGUCCGUACGGCCCCUCUUACUCCAC

.....(((((........................(((((..((((...........)))).........(((((..........)))))..((((.....((.......................)....)...............((.(((...(((...........))).....)))))....)))).....(.....((((..(.....)...(((..........((((.....(((............((.(...............).).).....((..................................((.(..................)))................................))....)))(((((.....))))).....))))......))).)))).....)...........))))).........))))).......((((................................))))......((((((......(((........................)))....)))))).(((((..........)))))...((((((((.(((((....)))))...))))))))..((((((((.........................)))).))))..