Subfamily Intron_gpI-IE3

Download the aligments for this family. (.stk)

RNA Shape

Level1

()(())((((((())))())))((((())(())((())))()))(((()))(())(())((())))

Level2

()()(()())((()()())())(()()()())

Consensus Secondary Structure representation

>predicted reference Intron_gpI-IE3

CAAUAACAGGUUAACCUUCACAGGCCUGUAACAGUGGGCCUCGUUAAACCCGCUAGUCCAGCAUCUUUUCCUCCGGGGGGGAAGCCCCCCCUUAUCGGGCGGAGAGGCGGCGUCGGGCGCCUGUUGCGGGCGACACCACCUGGUACAGGGAACGCCUAACCGCGAAACGGGCAGGCCGAUCCUGUGGCGAGCUCGGGUAGCGCCGAGCCGUCGCAACGCGCGCAAAGGGGUGGGCUGGCCCUCUGGGGCCGGCUUAAGGUACGUGCUAAUCCCAUGGGAAACCUUGCCCCUGCAAAGAGGCCCGACAAGCCGAAACCGCAGGGGGGCGCGCCCCGUAAACCGGCGCGCUGGGCUGCGCGCCGCUCCCGGCGCGCGCCUAAAAUGCUGUGAUGCCCUU

.....(((((((..........)))))))...(.((((..........)))).).((.(...((....((..(((((..........)..)........))).))(((..........))).))...).))....(..(.(...((((((...((((...............))))...))))))((((.((((((......))))))))))...(..(.(.....).).))(((((((((....)))))))))........).)...((.(.(.(.....).).)(((((........(..........)........)))))((((....(((.....)))..))))..((.(((((((......)))))))).)....))..............