Subfamily Intron_gpI-IE2

Download the aligments for this family. (.stk)

RNA Shape

Level1

()((()))((()))((((((((())))))(((())))(())())))(()(((())))((())))

Level2

()()()(()()()())(()()())

Consensus Secondary Structure representation

>predicted reference Intron_gpI-IE2

AAGUCUGGUGAAAAUUCAACACUGCUGUUGACGCCAGAGAUAGUAGGGCCGCCCUACAGGGUGUUAUGCCUGCUAGUCGAGCACCCGAAUAAUGUAUGGGUGGGUGCCGGCGAGAUGACCUGGUACGGGGAAGGCCAACGGCUGGGUCUAAUGCUGCUAUGGGUAAUCCCGUGGCGAGCCUGCAAAGGGCGACCUUUGCAGAAGCCGUCGUAACGCACGGAAAGGCAUCGGCCGACUCCUCCGGAGUCGGCUUAAGGGACGUGCUAAUCCCAUCCGAAAGGAUGCCCUAAGCAGGAGCGCCCAUACCGCAAAGGUUCGGGGGGGCAGCGGUGUAUGAGGAAAUGAUACCACUCCCGGUAGUAAAUGGCCAGCAGCCGCGG

...(((((((.....................)))))))..(((((((....(.(......).).....)))))))((.(..(((((...............))))).).))..(.((.(.....(.((.(...((((.((((..........)))).)...)))..).)).)((((.((.(.(.................).)))))))...(....(.....)...).((((((((.......))))))))........))).).((..(((((....)))))(((.((.(....((.........))....)))..)))(((.((..((((...........))))..)))))........))...............