Family tmRNA

Download the aligments for this family. (.stk)

RNA Shape

Level1

(((((([(])()((<))>({)}((<<))>>)))))())

Level2

(([(])()(<)>({)}(<)>)())

Consensus Secondary Structure representation

>predicted reference tmRNA 
GGGGCUGAAUGGUUUCGACGGGGGUGAUAAAAACUCCUUGAAUGCAUGCCGAGGGGCGGUUACCUCGUAAAUAAAAACCGCCAAAAAAAUAAAUGCAAACAACAAUAACUACUUGUCGCUCUCGCCGCUUAAGCGGCGAGACCUCCCUCCCCCGUUUGCCCGUUGACGGGGGGAGGGAGGUCAUAAAACGGGAUCCCCGCAACGCGGUUGCGGGUUGCGGGGAAAUUAAAAGAACUGGCCUCUGGAUAGCCUGUCCGUCGGCGAUCCAGAGGCGAAAACAGACAAGACUAAGCAUGUAGAAAUCAAGGGGGGAAGCACUUUCGGACGGGGGUUCGAUUCCCCCCAGCUCCACCA
(((((((...........((((((((.(.....((((((((.(.((((([[[[[(((((((.]]]]]........))))))).....................................(((((((((....)))))))))((((((((((((((...<<<<<<.)))).))))))))))......>>>>>>..(((((((((..{{{{....)))))))))..........}}}}.((((((((((.(((.<<<.<<<))).)))))))))).......>>>..>>>...)))))....).))))))))...).))))))))...(((((.......))))))))))))....