Family alpha_tmRNA

Download the aligments for this family. (.stk)

RNA Shape

Level1

()((((()()))))[<<]>>{<}>

Level2

()(()())[<]>{<}>

Consensus Secondary Structure representation

>predicted reference alpha_tmRNA 
GACCUUUACAUUUUAAUCAAAUUAAGCUAUAAUUUUGGUGCCGGUUAGCCGGCUAUGGCGAUAAACGCACCUUGGAAUAGACGCUUCGGACCCGGGGGCAGUACCCGGCGCCUCCACCAAAACUCUAUAAGUAAUGUGUUUUUUAUUUUAUGGGGGCGAAAUAGGAUCGACGAGCGUAAUAAAGAAGGUGCUUUCGCCCGGUAUGAUUCCGCCGUUAUCGGGUCAAAACAAAUAAAUGCAAACGAUAACUAUGCUUCUGUAGUUGUAGUUGCAGCUUAAUUAAAAAUUAAAGUCUUAUGCGCGGUUCGGGGUUUACCGGGCAACAGAAAAACCCCACU
.......................................(((((....)))))...(((((.....(((((((........(((.(((...(((((.......)))))(((((((....................................)))))))............))))))........)))))))..)))))[[[[.<<<.<<<]]]].....>>>>>>............................................................................{{{{..<<<<<<<}}}}..........>>>>>>>...