Family SOX2OT_exon3

Download the aligments for this family. (.stk)

RNA Shape

Level1

((()(((()(((((())))))((())))))))

Level2

(()(()()()))

Consensus Secondary Structure representation

Comment:Consensus Secondary Structure predicted by PETfold

>predicted reference SOX2OT_exon3 
UGGCAAAGCUAGGCUAGGUCUUGGAGGCUGGUGUGAGGCGAUGCGGGUGAAGGCAGGAGGCUGAUGGAGAGACUGGGGGGAAGAAAAGCCGAAAUGGAUUCACGGUGCCUUGGAUGGAGGAUGAGAGGGGAACUGCGGGCUCCUUCAACUCGUUCUGUCCGGUGAGAAGUGAUCAAGCUUGGGCUGACAAGAGGCUCAGGGAGCCUUCACGUUCUUUCGCUUUUUUACCUGCCAAUCAAACUGCUACAAGACAACACCCUGAUCUGGCAUGGACAU
.......((((((.((((.((...))................((((..(..((((((...(((..........)))..........((((......(.........(((..((((((((...(((.(((((.........)))))...))).)))))))))))..........).......))))...(((((((..(((((((......))))))).)).))))).))))))...)...)))).............)))).))))))........