Family SOX2OT_exon1

Download the aligments for this family. (.stk)

RNA Shape

Level1

((())()((()))((((())(())))))

Level2

(()()()(()()))

Consensus Secondary Structure representation

Comment:Consensus Secondary Structure predicted by PETfold

>predicted reference SOX2OT_exon1 
ACAGCUUUGGACAAAAGUCUAUAGCCAGUGCAUUUGAAACUCCCCUUGCACAAGGGCUGACUGUAGCUGGGGGAAGACAUUUUACUCAUUUGCUCUCUCCUUUCAUACAGUCAGCUGGUCCCUCUUCUCAGGUGUAGAUCACCUAUUAUAAUUUCACCUGUUUUGAUACUCUGAUGGGGAAAGUCCCAGGACUUGUCAGCUGGGAUAGGCCUCAUUUACAAGACAGCUCU
...(((.(((((....))))).)....(((((..............)))))....((((((((((.........(((((...........)).))).........))))))))))(.((.......((((((((....................)))).............))..((((...(((((((..........)))))))...)))).......)))))))...