International institute of molecular and cell biology in Warzawa

Family Rev42_5p_UTR


Download the aligments for this family. (.stk)

RNA Shape

Level1
((((())(())(())())))(((((((((()))((()))((((()))))((())))))))))(())
Level2
(()()()())(()()()())()

Consensus Secondary Structure representation

>predicted reference Rev42_5p_UTR 
CAGUAAGAUGGAGAGGACGGCGAGCGGCCAAAUGAGGCAGCUGAGCCACUGAAGCCGGCUCGGAAUGUGGCUCAUGACCUGGGGAACCCAGUCAUUUAAUUGGGUGAAAAGCCACCAAAAAGCGCCGCCCAUCAGCGCGAUACUCAUGGGUAAAGGAAGAACAACGAAACGCCGGAUGCCCGGCAGAGAGAUCAAGCGCCAUCCGGCAAGAAAACGGCGUACGCCGCUGCGAGUUUGGCCUGCGGCGUCGCCGUAAGGUGGUCUUCCCGAAGACAUGGUGCCAAUACACUCAGUCAUCUGUUUGUUGAGGCACCAUAUCGGGAUGACCUUAUGCUGACUAGCCCAUAUUUGGAUGAAAAAGCAGCAAAAAAGUGCGUUGUAUCUACCUUUACUGCCAUAAAGUACCGCGCAGGCCUGCACUUGUGUACUCAGGCAAAUAGAGU
......(((((....(.((((((((.(((......))).)))(((((((.....(((...)))...)))))))(((((..((....))..))))).......((((......))))......))))))))))).(((((.((((.(((((((((((.((.((((((..((((((((((..((...((....))...)).))))))))......((((((.(((((((.((.......))..))))))))))))).....((((.((((((....((((((((...(((..(((....)))..)))...)))))))).)))))).))))...(((((.((...(((....))).......))))))).....)).))))))..)).)))))))..))))..)))).)))))..(((((.((....))...))))).........





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