International institute of molecular and cell biology in Warzawa

Family RUF21


Download the aligments for this family. (.stk)

RNA Shape

Level1
((()())((()(()()))(())))
Level2
((()())((()(()()))()))

Consensus Secondary Structure representation

>predicted reference RUF21 
GUUUUCCAUUUUCUAAAAAUUAAAAAAAAAAAAAACCGAAAUAAUGAAAAAUUCGGGGUUAGCCUUGGCUAAAGUGGACCCACACACAAUUUACCCAGAAUUUUUAUCCACCCAACCCCAGAUCACUGAAAACGAAAUAUAUAUCACUAUUCACGCAUGGUUCCAAUUAUGGCGGCUAGAUGAUGAAGAUUUAAUCAGCUAUCUUCUGUUAAAUAAAAAGACUAGAAGCAGCGUAUUGUUGAUAAUCAUAUCUAUAAUAUGUACAAAGUGUAUUGGAAUUGUGGGAAGAACAAUAUAAAACAAGAGUUUUCUGUUUAUGAUUAGUUCAUAACAGAAUUUUGAGGAAAGAGGGGAACACCAUAAAUACAUGUUCCACAACCAUCAACAUGUUGUAGUCUUCUUUCUUUGGAAGAAGUAGUCCUUUAUUACCUUUCCUUAAUUAAAUCUUUGAUCUGAAUAAUAUUGUAAGUUCUUUUUUAUCGGCCUUCUCUUUAUAUAUAUAUAUAUAUAUUUACUAAUACUCGGGGUGUUUUUUUUAGCCGCCGAAGUGAGGAUUAAAAAUCAAUAGCUUGAAAGGGUAAAGGUAGUUAAGAUAGUAUAUACAUAUAUAUGUACAUAUACAUAUAUAUAUAUACAUAUUGAAUUACAUACUUCAAUAAGGAAUGGUAUAAAAUUUUUCGUACAGUAAUA
...........................................((((((((...(((((((((....))))..(((........)))...........................)))))....................(((((((.......................(((((((((((..............................................(((((....))))).........................................((((.......................(((((((..............))))))).....(((((((.................................................................................)))))))....................................................................................))))..........)))))))))))......................................((((((......(((((((..........................)))))))......))))))................)))))))...)))))))).........





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