Family RNAIII

Download the aligments for this family. (.stk)

RNA Shape

Level1

()(((()(())(())()((()))(()(())())()()))()((())))()

Level2

()((()()()()()(()()())()())()())()

Consensus Secondary Structure representation

>predicted reference RNAIII 
AUAUCACAGAGAUGUGAUUGAAACUAGUUAAUGAGUUGUUUAAUUUUUGGAAUAUUUAUCCAAAAUAAGGAAGGAGUGAUUUCAAUGGCAGAAGAUAUCAUUUCAACAAUCGGUGACCUAGUAAAAUGGAUCAUCGAUACAGUGAAAAAAUUCACUAAAUAAUAAGAUGAGCGAUACUUUCAUUGUAACUUCGCUAUCUUCUUGUAGCACUAAAAGUUGAGUUAUUAAGCCAUCCCAACUUAAUAACUAUUAAUACUAAGUGACUAACAUUUACUAGUAGAGUCAUUUUCCUUGGACUCAGUGCUACUUAUUAUUAUUAGUUACCAUUAUAGGUAACUAUUUUUAGCAUGUAAGCUAUCGUAAACAACAUCCAAUUUAUCGUAAAUCGAUAAAUUCAUAAAAUUUUUUCAUAAUUAAUAACAUCCCCAAAAAUAGAUUGAAAAAAUAACUGGAAAACAUUCCCUUAAUAAUAAGUUAAAAAGCCGUGAGCCCCUCCCAAGCUCACGGCUUU
..((((((....)))))).....(((((((..((((((((((...((((((.......))))))........((((((((.((..........)).)))))))).....(((((((((.........)).)))))))....(((((....)))))..........(((.((((((((.......)))...)))))))).....((((((((.........(((((((((.........))))))))).......(((...((.....))......))).(((((..........)))))))))))))..........((((((((......))))))))....((((......))))...)))))))).))..((((((((.....))))))))........((((((((..(((.((.............)).))))))))))))))))))............................((((((((((.........))))))))))..