Family IRES_HepA

Download the aligments for this family. (.stk)

RNA Shape

Level1

()(()())((()(())()()))(((()())))

Level2

()(()())(()()()())(()())

Consensus Secondary Structure representation

>predicted reference IRES_HepA 
CAGGGUUCUUUAAUCUGUUUCUCUAUAAGAACACUCAAUUUUCACGCUUUCUGUCUUCUUUCUUCCAGGGCUCUCCCCUUGCCCUAGGCUCCGGCCGUUGCGCCCGGCGGGGUCAACUCCAUGAUUAGCAUGGAGCUGUAGGAGUCUAAAUUGGGGACGCAGAUGUUUGGGACGUCACCUUGCAGUGUUAACUUGGCUUUCAUGAAUCUCUUUGAUCUUCCACAAGGGGUAGGCUACGGGUGAAACCCCUUAGGCUAAUACUUCUAUGAAGAGAUGCCUUGGAUAGGGUAACAGCGGCGGAUAUUGGUGAGUUGUUAAGACAAAAACCAUUCAACGCCGGAGGACUGGCUCUCAUCCAGUGGAUGCAUUGAGUGGAUUGAUUGUCAGGGCUGUCUCUAGGUUUAAUCCCAGACCUCUCUGCGCUUAGGGCAAACACCACUUGGCCUUAAAUGGGAUCCUGUGAGAGGGGAUCCCUCCAUUGACAGCUGGACUGUCCUUUGGGGCCUUAUGUGGUGUUUGCCUCUGAGGUACUCAGGGGCAUUUAGGUUUUUCCUCAUUCUUAAAUAAUAAUG
..................((((.....)))).....................................................((((((((..((((((....))))))......(((((((.....))))))).....)))))))).........((((((.((((((((....................................................((((((..............)))))).((((.....((((...))))....))))...............(((((...................................))))).............((((((.))))))........................................))))))))...))))))((((.((((((((((((..(((((((((.((((((((.......))))))))......(((((.....))))).)))))))))....))))))))))))..)))).............................................