Family IRES_HCV

Download the aligments for this family. (.stk)

RNA Shape

Level1

(((())))(((((()(((())))()))((()))))()())

Level2

()(((()()())())()())

Consensus Secondary Structure representation

>predicted reference IRES_HCV 
UUCGGGUCAAGCGCCUAGCCAUGGCGCUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGCGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCCAGUAGCGUUGGGUCGCGAAGGGCCUUGUGGUACUGCCUGAUAGGGCGCUUGUGCCCCGGGAGG
...(((.((((((((.......))))))........)).........).)).........(((((((((((.(((((((((((((((((..((((((....))))))((((.(((((..((.(((((..............))))).))....))))).)))).(((....))))))).)))))))))((((..(.(((......))).).))))....)))).))(((......)))((....)))))))))))