mqaprna.py

ver: 52e618e-dirty

start  2017-10-06 17:34:15
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Seq ss fn                   /home/mqapRNA/mqapRNAweb/media/jobs/78509c85-b91e-4b61-80ca-e22f0d2be7cc/ss.txt
Output csv                  /home/mqapRNA/mqapRNAweb/media/jobs/78509c85-b91e-4b61-80ca-e22f0d2be7cc/78509c8_raw.csv
Input files                 #1 ['input/BujnickiLab_RNApuzzle14_n04bound.pdb']
RNAkb                       5pt
Model path                  /home/magnus/Dropbox/WORK_/mqaprna-papier/SVMlin.rda
Multiprocessing             on
Verbose                     off
Ignore pdb fn               off
Methods                     ClashScore,AnalyzeGeometry,FARNA,SimRNA_0,RNAscore,eSCORE,RNAkb,SSAgreement,FARNA_hires,RASP,RNAkb_all
rmsd                        biopython_all
Native pdb                  off
RASP                        all
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AnalyzeGeometry             on
SSAgreement                 on
 pdb_id               >seq
 ref_seq              CGUUGACCCAGGAAACUGGGCGGAAGUAAGGCCCAUUGCACUCCGGGCCUGAAGCAACGCG
 ref_ss               (((((.(((((....)))))(.......((((((..........))))))...))))))..
 to ignore 0 []
 files to analyze: 1 ['input/BujnickiLab_RNApuzzle14_n04bound.pdb']
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3dRNAscore::err Point::dihedral: error!