SimRNA (c) 2009-2024 Genesilico, ver. 3.33

Replica Exchange Monte Carlo Method is SWITCHED ON
10 replicas were ordered

.reading parameteres

setting random seed = 1
initiating replica nr:  1
before entireStruct->initialize(input)

reading input pdb file: /home/simrnaweb/SimRNAWeb/SIMULATIONS/sontaina_test-3d61e0df/inputs/struct.pdb

number of recognized chains: 1

chain 'A' contains: 93 residues
ERROR: chain 'A' looks like RNA but missing P atom at position: 1
ERROR: chain 'A' looks like RNA but missing P atom at position: 81
ERROR: chain 'A' looks like RNA but missing P atom at position: 82
ERROR: chain 'A' looks like RNA but missing P atom at position: 83
ERROR: chain 'A' looks like RNA but missing P atom at position: 84
ERROR: chain 'A' looks like RNA but missing P atom at position: 85
ERROR: chain 'A' looks like RNA but missing P atom at position: 86
ERROR: chain 'A' looks like RNA but missing P atom at position: 87
ERROR: chain 'A' looks like RNA but missing P atom at position: 88
ERROR: chain 'A' looks like RNA but missing P atom at position: 89
ERROR: chain 'A' looks like RNA but missing P atom at position: 90
ERROR: chain 'A' looks like RNA but missing P atom at position: 91
ERROR: chain 'A' looks like RNA but missing P atom at position: 92
ERROR: chain 'A' looks like RNA but missing P atom at position: 93
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 81
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 82
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 83
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 84
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 85
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 86
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 87
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 88
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 89
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 90
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 91
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 92
ERROR: chain 'A' looks like RNA but missing C4' or C4* atom at position: 93
ERROR: program termination
out arg RESULTS//1/sontaina_test-3d61e0df_01