SimRNA (c) 2009-2024 Genesilico, ver. 3.33

Replica Exchange Monte Carlo Method is SWITCHED ON
10 replicas were ordered

.reading parameteres

setting random seed = 1
initiating replica nr:  1
before entireStruct->initialize(input)

reading input pdb file: /home/simrnaweb/SimRNAWeb/SIMULATIONS/rna_folding_test-88ecccf9/inputs/struct.pdb

number of recognized chains: 2

chain 'A' contains: 20 residues
chain 'A' is classified as PROTEIN

chain 'B' contains: 28 residues
chain 'B' is classified as PROTEIN


number of PROTEIN chain(s) to be parsed: 2
ProteinStructure(struct InputParam): Fraction Of Two Atoms Moves = 0.900000
ProteinStructure(struct InputParam): Fraction Of Conformer Change Moves = 0.100000
ProteinStructure(struct InputParam): Fraction Of Rigid Rotation Moves = 0.000000
ProteinStructure(struct InputParam): Fraction Of Rigid Translation Moves = 0.000000


PROTEIN chains:
chain A contains 20 residues
chain B contains 28 residues

uknown type (name) of protein residue: _PCA_, at CA atom, chainId: B, atom_number: 297, residue_number: -2
out arg RESULTS//1/rna_folding_test-88ecccf9_01