SimRNA (c) 2009-2024 Genesilico, ver. 3.33 Replica Exchange Monte Carlo Method is SWITCHED ON 10 replicas were ordered .reading parameteres setting random seed = 1 initiating replica nr: 1 before entireStruct->initialize(input) reading input pdb file: /home/simrnaweb/SimRNAWeb/SIMULATIONS/hi-d02ff126/inputs/struct.pdb number of recognized chains: 1 chain 'A' contains: 18 residues chain 'A' is classfied as RNA number of RNA chain(s) to be parsed: 1 RNAStructure(struct InputParam): Fraction Of One Atom Moves = 0.450000 RNAStructure(struct InputParam): Fraction Of Two Atoms Moves = 0.440000 RNAStructure(struct InputParam): Fraction Of Fragment Moves = 0.010000 RNAStructure(struct InputParam): Fraction Of Nitrogen Atom Moves = 0.100000 RNAStructure(struct InputParam): Fraction Of Rigid Rotation Moves = 0.000000 RNAStructure(struct InputParam): Fraction Of Rigid Translation Moves = 0.000000 RNA chains: chain A contains 18 nucleotides unrecognized type of nucleotide, name: t nucleotide not initiated unrecognized type of nucleotide, name: t nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated unrecognized type of nucleotide, name: c nucleotide not initiated unrecognized type of nucleotide, name: g nucleotide not initiated ERROR: program terminated due to 18 error(s) found while reading input pdb fileout arg RESULTS//1/hi-d02ff126_01