| 2005 |
Y Wang |
S K Silverman |
Efficient one-step synthesis of biologically related lariat RNAs by a deoxyribozyme. |
16086354 |
10.1002/anie.200501643 |
RNA ligation
|
| 2003 |
Y Wang |
S K Silverman |
Characterization of deoxyribozymes that synthesize branched RNA. |
14690435 |
10.1021/bi0355847 |
RNA ligation
|
| 2008 |
T P Mui |
S K Silverman |
Convergent and general one-step DNA-catalyzed synthesis of multiply branched DNA. |
18808125 |
10.1021/ol801568q |
DNA ligation
|
| 2004 |
D J-F Chinnapen |
D Sen |
A deoxyribozyme that harnesses light to repair thymine dimers in DNA. |
14691255 |
10.1073/pnas.0305943101 |
Thymine dimer repair
|
| 2010 |
F Wachowius |
C Höbartner |
Combinatorial mutation interference analysis reveals functional nucleotides required for DNA catalysis. |
20872387 |
10.1002/anie.201003940 |
RNA ligation
|
| 1994 |
R R Breaker |
G F Joyce |
A DNA enzyme that cleaves RNA. |
9383394 |
10.1016/1074-5521(94)90014-0 |
RNA cleavage
|
| 1997 |
S W Santoro |
G F Joyce |
A general purpose RNA-cleaving DNA enzyme. |
9113977 |
10.1073/pnas.94.9.4262 |
RNA cleavage
|
| 1997 |
C R Geyer |
D Sen |
Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme. |
9281526 |
10.1016/s1074-5521(97)90244-1 |
RNA cleavage
|
| 1996 |
Y Li |
D Sen |
A catalytic DNA for porphyrin metallation |
None |
10.1038/nsb0996-743 |
Porphyrin metalation
|
| 2007 |
C Höbartner |
S K Silverman |
Site-selective depurination by a periodate-dependent deoxyribozyme. |
17534508 |
10.1039/b704507g |
DNA depurination
|
| 2008 |
P I Pradeepkumar |
Scott K Silverman |
DNA-catalyzed formation of nucleopeptide linkages. |
18214866 |
10.1002/anie.200703676 |
Covalent Modification of Amino Acid Side Chains
RNA ligation
|
| 2008 |
D M Kost |
S K Silverman |
Controlling the direction of site-selectivity and regioselectivity in RNA ligation by Zn2+-dependent deoxyribozymes that use 2',3'-cyclic phosphate RNA substrates. |
19005599 |
10.1039/B813566E |
RNA ligation
|
| 2000 |
A Peracchi |
|
Preferential Activation of the 8–17 Deoxyribozyme by Ca2+ Ions EVIDENCE FOR THE IDENTITY OF 8–17 WITH THE CATALYTIC DOMAIN OF THE MG5 DEOXYRIBOZYME |
None |
10.1074/jbc.275.16.11693 |
RNA cleavage
|
| 1996 |
D Faulhammer |
M Famulok |
The Ca2+ Ion as a Cofactor for a Novel RNA‐Cleaving Deoxyribozyme |
None |
10.1002/anie.199628371 |
RNA cleavage
|
| 2005 |
Y Wang |
S K Silverman |
Directing the outcome of deoxyribozyme selections to favor native 3'-5' RNA ligation. |
15723545 |
10.1021/bi0478291 |
RNA ligation
|
| 2006 |
N Paul |
G F Joyce |
Conversion of a ribozyme to a deoxyribozyme through in vitro evolution. |
16638538 |
10.1016/j.chembiol.2006.01.007 |
RNA ligation
|
| 2003 |
Y Wang |
S K Silverman |
Deoxyribozymes that synthesize branched and lariat RNA. |
12783536 |
10.1021/ja035150z |
RNA ligation
|
| 2004 |
T K Prior |
S K Silverman |
Structure-function correlations derived from faster variants of a RNA ligase deoxyribozyme. |
14960718 |
10.1093/nar/gkh263 |
RNA ligation
|
| 2004 |
R L Coppins |
S K Silverman |
A DNA enzyme that mimics the first step of RNA splicing. |
14758353 |
10.1038/nsmb727 |
RNA ligation
|
| 2011 |
F Wachowius |
C Höbartner |
Probing essential nucleobase functional groups in aptamers and deoxyribozymes by nucleotide analogue interference mapping of DNA. |
21863810 |
10.1021/ja205894w |
RNA ligation
|
| 2005 |
W E Purtha |
S K Silverman |
General deoxyribozyme-catalyzed synthesis of native 3'-5' RNA linkages. |
16173722 |
10.1021/ja0533702 |
RNA ligation
|
| 2005 |
K A Hoadley |
S K Silverman |
Zn2+-dependent deoxyribozymes that form natural and unnatural RNA linkages. |
15966746 |
10.1021/bi050146g |
RNA ligation
|
| 2007 |
C Höbartner |
S K Silverman |
Engineering a selective small-molecule substrate binding site into a deoxyribozyme. |
17694519 |
10.1002/anie.200702217 |
RNA ligation
|
| 2005 |
R L Coppins |
S K Silverman |
Mimicking the first step of RNA splicing: an artificial DNA enzyme can synthesize branched RNA using an oligonucleotide leaving group as a 5'-exon analogue. |
16216067 |
10.1021/bi0507229 |
RNA ligation
|
| 2005 |
R L Coppins |
S K Silverman |
A deoxyribozyme that forms a three-helix-junction complex with its RNA substrates and has general RNA branch-forming activity. |
15740125 |
10.1021/ja044881b |
RNA ligation
|
| 2004 |
R L Coppins |
S K Silverman |
Rational modification of a selection strategy leads to deoxyribozymes that create native 3'-5' RNA linkages. |
15600344 |
10.1021/ja045817x |
RNA ligation
|
| 2006 |
E Zelin |
Scott K Silverman |
Adenosine is inherently favored as the branch-site RNA nucleotide in a structural context that resembles natural RNA splicing. |
16503631 |
10.1021/bi052499l |
RNA ligation
|
| 2005 |
D R Semlow |
S K Silverman |
Parallel selections in vitro reveal a preference for 2'-5' RNA ligation upon deoxyribozyme-mediated opening of a 2',3'-cyclic phosphate. |
16007488 |
10.1007/s00239-004-0326-y |
RNA ligation
|
| 2018 |
A Barlev |
D Sen |
DNA's Encounter with Ultraviolet Light: An Instinct for Self-Preservation? |
29419284 |
10.1021/acs.accounts.7b00582 |
Thymine dimer repair
|
| 2016 |
A Barlev |
D Sen |
DNA Repair by DNA: The UV1C DNAzyme Catalyzes Photoreactivation of Cyclobutane Thymine Dimers in DNA More Effectively than Their de Novo Formation. |
27726378 |
10.1021/acs.biochem.6b00951 |
Thymine dimer repair
|
| 1995 |
R R Breaker |
G F Joyce |
A DNA enzyme with Mg(2+)-dependent RNA phosphoesterase activity. |
9383471 |
10.1016/1074-5521(95)90028-4 |
RNA cleavage
|
| 1997 |
D Faulhammer |
M Famulok |
Characterization and divalent metal-ion dependence of in vitro selected deoxyribozymes which cleave DNA/RNA chimeric oligonucleotides. |
9191064 |
10.1006/jmbi.1997.1036 |
RNA cleavage
|
| 1998 |
A Roth |
R R Breaker |
An amino acid as a cofactor for a catalytic polynucleotide. |
9600911 |
10.1073/pnas.95.11.6027 |
RNA cleavage
|
| 2008 |
M Hollenstein |
D M Perrin |
A Highly Selective DNAzyme Sensor for Mercuric Ions |
None |
10.1002/anie.200800960 |
RNA cleavage
|
| 2000 |
J Nowakowski |
G F Joyce |
Alternative conformations of a nucleic acid four-way junction. |
10864501 |
10.1006/jmbi.2000.3826 |
RNA cleavage
|
| 1995 |
B Cuenoud |
J W Szostak |
A DNA metalloenzyme with DNA ligase activity. |
7791880 |
10.1038/375611a0 |
DNA ligation
|
| 2012 |
T E Velez |
S K Silverman |
Systematic evaluation of the dependence of deoxyribozyme catalysis on random region length. |
23088677 |
10.1021/co300111f |
DNA cleavage
Covalent Modification of Amino Acid Side Chains
|
| 2018 |
M V Sednev |
C Höbartner |
N -Methyladenosine-Sensitive RNA-Cleaving Deoxyribozymes. |
30276938 |
10.1002/anie.201808745 |
RNA cleavage
|
| 2003 |
A Flynn-Charlebois |
S K Silverman |
In vitro evolution of an RNA-cleaving DNA enzyme into an RNA ligase switches the selectivity from 3'-5' to 2'-5'. |
12720447 |
10.1021/ja0340331 |
RNA ligation
|
| 2019 |
J Aranda |
M Orozco |
An artificial DNAzyme RNA ligase shows a reaction mechanism resembling that of cellular polymerases |
None |
10.1038/s41929-019-0290-y |
RNA ligation
|
| 1997 |
Y Li |
D Sen |
Toward an efficient DNAzyme. |
9154943 |
10.1021/bi962694n |
Porphyrin metalation
|
| 2013 |
J Chandrasekar |
S K Silverman |
Catalytic DNA with phosphatase activity. |
23509279 |
10.1073/pnas.1221946110 |
Dephosphorylation
|
| 2005 |
E D Pratico |
S K Silverman |
A deoxyribozyme that synthesizes 2',5'-branched RNA with any branch-site nucleotide. |
15967808 |
10.1093/nar/gki656 |
RNA ligation
|
| 2000 |
J Li |
Y Lu |
A Highly Sensitive and Selective Catalytic DNA Biosensor for Lead Ions |
None |
10.1021/ja0021316 |
RNA cleavage
|
| 1999 |
J Nowakowski |
G F Joyce |
Crystal structure of an 82-nucleotide RNA–DNA complex formed by the 10-23 DNA enzyme |
None |
10.1038/5839 |
RNA cleavage
|
| 2000 |
Y Li |
R R Breaker |
Capping DNA with DNA. |
10715132 |
10.1021/bi992710r |
DNA capping
|
| 2017 |
H Liu |
J Gan |
Crystal structure of an RNA-cleaving DNAzyme. |
29222499 |
10.1038/s41467-017-02203-x |
RNA cleavage
|
| 2003 |
B L Ricca |
S K Silverman |
Optimization and generality of a small deoxyribozyme that ligates RNA. |
12860124 |
10.1016/S0022-2836(03)00654-5 |
RNA ligation
|
| 2009 |
R E Thorne |
D Sen |
A deoxyribozyme, Sero1C, uses light and serotonin to repair diverse pyrimidine dimers in DNA. |
19281822 |
10.1016/j.jmb.2009.02.064 |
Thymine dimer repair
|
| 2003 |
A Flynn-Charlebois |
S K Silverman |
Deoxyribozymes with 2'-5' RNA ligase activity. |
12603132 |
10.1021/ja028774y |
RNA ligation
|
| 2016 |
A Ponce-Salvatierra |
V Pena |
Crystal structure of a DNA catalyst. |
26735012 |
10.1038/nature16471 |
RNA ligation
|
| 2011 |
Y Xiao |
S K Silverman |
Merely two mutations switch a DNA-hydrolyzing deoxyribozyme from heterobimetallic (Zn2+/Mn2+) to monometallic (Zn2+-only) behavior. |
21125108 |
10.1039/c0cc04575f |
DNA cleavage
|
| 2002 |
W Wang |
Y Li |
Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes. |
11983339 |
10.1016/S1074-5521(02)00127-8 |
DNA phosphorylation
|
| 2000 |
J Li |
Y Lu |
In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme. |
10606646 |
10.1093/nar/28.2.481 |
RNA cleavage
|
| 2011 |
O Y Wong |
S K Silverman |
DNA-catalyzed covalent modification of amino acid side chains in tethered and free peptide substrates. |
21510668 |
10.1021/bi200585n |
Covalent Modification of Amino Acid Side Chains
|
| 2016 |
R Saran |
J Liu |
A Silver DNAzyme. |
26977895 |
10.1021/acs.analchem.6b00327 |
RNA cleavage
|
| 2013 |
S M Walsh |
S K Silverman |
DNA catalysts with tyrosine kinase activity. |
24066831 |
10.1021/ja407586u |
Tyrosine Phosphorylation
|
| 2011 |
C S Lee |
S K Silverman |
Improved deoxyribozymes for synthesis of covalently branched DNA and RNA. |
20739352 |
10.1093/nar/gkq753 |
RNA ligation
DNA ligation
|
| 2009 |
G S Sekhon |
D Sen |
Unusual DNA-DNA cross-links between a photolyase deoxyribozyme, UV1C, and its bound oligonucleotide substrate. |
19514779 |
10.1021/bi900531z |
Thymine dimer repair
|
| 2007 |
D J-F Chinnapen |
D Sen |
Towards elucidation of the mechanism of UV1C, a deoxyribozyme with photolyase activity. |
17141270 |
10.1016/j.jmb.2006.10.062 |
Thymine dimer repair
|
| 1996 |
N Carmi |
R R Breaker |
In vitro selection of self-cleaving DNAs. |
9000012 |
10.1016/s1074-5521(96)90170-2 |
DNA cleavage
|
| 2000 |
T L Sheppard |
G F Joyce |
A DNA enzyme with N-glycosylase activity. |
10884411 |
10.1073/pnas.97.14.7802 |
DNA depurination
|
| 2011 |
O Y Wong |
S K Silverman |
DNA-catalyzed reductive amination. |
21994131 |
10.1002/anie.201104976 |
Reductive amination
|
| 2016 |
P Wang |
S K Silverman |
DNA-Catalyzed Introduction of Azide at Tyrosine for Peptide Modification. |
27391404 |
10.1002/anie.201604364 |
Tyrosine azido‐adenylylation
|
| 2014 |
C Chu |
S K Silverman |
A generalizable DNA-catalyzed approach to peptide-nucleic acid conjugation. |
25056930 |
10.1002/cbic.201402255 |
Covalent Modification of Amino Acid Side Chains
|
| 2010 |
A Sachdeva |
S K Silverman |
DNA-catalyzed serine side chain reactivity and selectivity. |
20234910 |
10.1039/b927317d |
Covalent Modification of Amino Acid Side Chains
|
| 2012 |
A Sachdeva |
S K Silverman |
Covalent tagging of phosphorylated peptides by phosphate-specific deoxyribozymes. |
22315198 |
10.1002/cbic.201200048 |
Covalent Modification of Phosphorylated Amino Acid Side Chains
|
| 2016 |
A J Camden |
S K Silverman |
DNA Oligonucleotide 3'-Phosphorylation by a DNA Enzyme. |
27063020 |
10.1021/acs.biochem.6b00151 |
DNA phosphorylation
|
| 2014 |
V Dokukin |
S K Silverman |
A modular tyrosine kinase deoxyribozyme with discrete aptamer and catalyst domains. |
25000337 |
10.1039/c4cc04253k |
Tyrosine Phosphorylation
|
| 2017 |
Y Lee |
S K Silverman |
DNA-Catalyzed DNA Cleavage by a Radical Pathway with Well-Defined Products. |
27935689 |
10.1021/jacs.6b10274 |
DNA cleavage
|
| 2012 |
A Sachdeva |
S K Silverman |
DNA-catalyzed reactivity of a phosphoramidate functional group and formation of an unusual pyrophosphoramidate linkage. |
22042295 |
10.1039/c1ob06088k |
Covalent Modification of Amino Acid Side Chains
|
| 2008 |
M Chandra |
S K Silverman |
DNA and RNA can be equally efficient catalysts for carbon-carbon bond formation. |
18271591 |
10.1021/ja7111965 |
Diels-Alder
|
| 2013 |
D J Parker |
S K Silverman |
DNA catalysis of a normally disfavored RNA hydrolysis reaction. |
23697866 |
10.1021/ja4032488 |
RNA cleavage
|
| 2014 |
B M Brandsen |
S K Silverman |
DNA-catalyzed lysine side chain modification. |
24981820 |
10.1002/anie.201404622 |
Covalent Modification of Amino Acid Side Chains
|
| 2015 |
J Chandrasekar |
S K Silverman |
Phosphoserine Lyase Deoxyribozymes: DNA-Catalyzed Formation of Dehydroalanine Residues in Peptides. |
26200899 |
10.1021/jacs.5b06308 |
Covalent Modification of Phosphorylated Amino Acid Side Chains
|
| 2016 |
C Chu |
S K Silverman |
Assessing histidine tags for recruiting deoxyribozymes to catalyze peptide and protein modification reactions. |
27138704 |
10.1039/c6ob00716c |
Tyrosine Phosphorylation
Covalent Modification of Amino Acid Side Chains
|
| 2015 |
S M Walsh |
S K Silverman |
Identification of Sequence-Selective Tyrosine Kinase Deoxyribozymes. |
26407964 |
10.1007/s00239-015-9699-3 |
Tyrosine Phosphorylation
|
| 2016 |
C Zhou |
S K Silverman |
DNA-Catalyzed Amide Hydrolysis. |
26854515 |
10.1021/jacs.5b12647 |
Amide hydrolysis
|
| 2016 |
A R Hesser |
S K Silverman |
DNA-catalyzed glycosylation using aryl glycoside donors. |
27355482 |
10.1039/c6cc04329a |
Glycosylation
|
| 2016 |
A Kasprowicz |
J Ciesiołka |
Characterization of Highly Efficient RNA‐Cleaving DNAzymes that Function at Acidic pH with No Divalent Metal‐Ion Cofactors |
None |
10.1002/open.201600141 |
RNA cleavage
|
| 2019 |
D Peng |
J Liu |
Efficient DNA-Catalyzed Porphyrin Metalation for Fluorescent Ratiometric Pb Detection. |
31414597 |
10.1021/acs.analchem.9b02759 |
Porphyrin metalation
|
| 2020 |
H Yang |
J Liu |
Pb2+ as a Substrate and a Cofactor of a Porphyrin Metalation DNAzyme. |
32202058 |
10.1002/cbic.202000073 |
Porphyrin metalation
|
| 2013 |
J Yang |
M T Bowser |
Capillary electrophoresis-SELEX selection of catalytic DNA aptamers for a small-molecule porphyrin target. |
23234289 |
10.1021/ac302721j |
Porphyrin metalation
|
| 1998 |
N Carmi |
R R Breaker |
Cleaving DNA with DNA. |
9482868 |
10.1073/pnas.95.5.2233 |
DNA cleavage
|
| 2020 |
A Liaqat |
C Höbartner |
N 6-isopentenyladenosine in RNA determines the cleavage site of endonuclease deoxyribozymes. |
32681686 |
10.1002/anie.202006218 |
RNA cleavage
|
| 2020 |
K Liu |
D Sen |
CLICK-17, a DNA enzyme that harnesses ultra-low concentrations of either Cu+ or Cu2+ to catalyze the azide-alkyne 'click' reaction in water. |
32520335 |
10.1093/nar/gkaa502 |
Copper-mediated Azide-Alkyne Cycloaddition (CuAAC)
|
| 2013 |
B M Brandsen |
S K Silverman |
DNA-catalyzed hydrolysis of esters and aromatic amides. |
24127695 |
10.1021/ja4077233 |
Ester hydrolysis
Amide hydrolysis
|
| 2009 |
M Chandra |
S K Silverman |
DNA-catalyzed sequence-specific hydrolysis of DNA |
None |
10.1038/nchembio.201 |
DNA cleavage
|
| 2012 |
Y Xiao |
S K Silverman |
Establishing broad generality of DNA catalysts for site-specific hydrolysis of single-stranded DNA. |
22021383 |
10.1093/nar/gkr860 |
DNA cleavage
|
| 2010 |
Y Xiao |
S K Silverman |
Functional compromises among pH tolerance, site specificity, and sequence tolerance for a DNA-hydrolyzing deoxyribozyme. |
20923239 |
10.1021/bi1013672 |
DNA cleavage
|
| 2001 |
N Carmi |
R R Breaker |
Characterization of a DNA-cleaving deoxyribozyme. |
11557347 |
10.1016/S0968-0896(01)00035-9 |
DNA cleavage
|
| 2013 |
A K Behera |
A Baum |
Enhanced deoxyribozyme‐catalyzed RNA ligation in the presence of organic cosolvents |
None |
10.1002/bip.22191 |
RNA ligation
|
| 2012 |
V Dokukin |
S K Silverman |
Lanthanide ions as required cofactors for DNA catalysts |
None |
10.1039/C2SC01067D |
DNA cleavage
|
| 2013 |
F Javadi-Zarnaghi |
|
Lanthanide cofactors accelerate DNA-catalyzed synthesis of branched RNA. |
23895365 |
10.1021/ja406162z |
RNA ligation
|
| 2003 |
Z Liu |
Y Li |
Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences. |
12812493 |
10.1021/ja035208+ |
RNA cleavage
|
| 2020 |
H Rosenbach |
I Span |
Molecular Features and Metal Ions That Influence 10-23 DNAzyme Activity. |
32646019 |
10.3390/molecules25133100 |
|
| 2005 |
J C Achenbach |
Y Li |
Secondary-structure characterization of two proficient kinase deoxyribozymes. |
15751953 |
10.1021/bi0483054 |
DNA phosphorylation
|
| 2009 |
K Schlosser |
Y Li |
DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides. |
19050014 |
10.1093/nar/gkn930 |
RNA cleavage
|
| 2003 |
M J Cairns |
L‐Q Sun |
Optimisation of the 10-23 DNAzyme-substrate pairing interactions enhanced RNA cleavage activity at purine-cytosine target sites. |
12771215 |
10.1093/nar/gkg378 |
RNA cleavage
|
| 2005 |
A Peracchi |
M Clerici |
A mutational analysis of the 8-17 deoxyribozyme core. |
16125199 |
10.1016/j.jmb.2005.07.059 |
RNA cleavage
|
| 2008 |
K Schlosser |
Y Li |
Sequence-function relationships provide new insight into the cleavage site selectivity of the 8–17 RNA-cleaving deoxyribozyme |
None |
10.1093/nar/gkm1175 |
RNA cleavage
|
| 2004 |
R P.G Cruz |
Y Li |
Dinucleotide Junction Cleavage Versatility of 8-17 Deoxyribozyme |
None |
10.1016/j.chembiol.2003.12.012 |
RNA cleavage
|
| 2008 |
K Schlosser |
J Gu, L Sule |
Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme |
None |
10.1093/nar/gkm1175 |
RNA cleavage
|
| 2019 |
E J Mattioli |
M Calvaresi |
DNAzymes at Work: A DFT Computational Investigation on the Mechanism of 9DB1 |
None |
10.1021/acs.jcim.8b00815 |
RNA ligation
|
| 2017 |
R Saran |
J Liu |
A Silver-Specific DNAzyme with a New Silver Aptamer and Salt-Promoted Activity. |
28345892 |
10.1021/acs.biochem.6b01131 |
RNA cleavage
|
| 2013 |
H Gu |
R R Breaker |
Small, highly active DNAs that hydrolyze DNA. |
23679108 |
10.1021/ja403585e |
DNA cleavage
|
| 2009 |
A K Brown |
Y Lu |
Biochemical characterization of a uranyl ion-specific DNAzyme. |
19142882 |
10.1002/cbic.200800632 |
RNA cleavage
|
| 2005 |
K E Nelson |
Y Lu |
In vitro selection of high temperature Zn(2+)-dependent DNAzymes. |
16096680 |
10.1007/s00239-004-0374-3 |
RNA cleavage
|
| 2014 |
P-J J Huang |
J Liu |
Ultrasensitive DNAzyme beacon for lanthanides and metal speciation. |
24383540 |
10.1021/ac403762s |
RNA cleavage
|
| 2017 |
W Zhou |
J Liu |
Two Completely Different Mechanisms for Highly Specific Na+ Recognition by DNAzymes |
None |
10.1002/cbic.201700184 |
RNA cleavage
|
| 2014 |
P-J J Huang |
J Liu |
In vitro selection of a new lanthanide-dependent DNAzyme for ratiometric sensing lanthanides. |
25199650 |
10.1021/ac5029962 |
RNA cleavage
|
| 2016 |
W Zhou |
J Liu |
A DNAzyme requiring two different metal ions at two distinct sites. |
26657636 |
10.1093/nar/gkv1346 |
RNA cleavage
|
| 2011 |
M M Ali |
Y Li |
Fluorogenic DNAzyme probes as bacterial indicators. |
21412961 |
10.1002/anie.201100477 |
RNA cleavage
|
| 2002 |
L Lermer |
D M Perrin |
Toward an RNaseA mimic: A DNAzyme with imidazoles and cationic amines. |
12188639 |
10.1021/ja0205075 |
RNA cleavage
|
| 2014 |
M Wang |
Z Tang |
In vitro selection of DNA-cleaving deoxyribozyme with site-specific thymidine excision activity. |
25030901 |
10.1093/nar/gku592 |
DNA cleavage
|
| 2010 |
J C F Lam |
Y Li |
A complex RNA-cleaving DNAzyme that can efficiently cleave a pyrimidine-pyrimidine junction. |
20630470 |
10.1016/j.jmb.2010.05.047 |
RNA cleavage
|
| 2009 |
M Hollenstein |
D M Perrin |
A DNAzyme with three protein-like functional groups: enhancing catalytic efficiency of M2+-independent RNA cleavage. |
19591189 |
10.1002/cbic.200900314 |
RNA cleavage
|
| 2015 |
S-F Torabi |
Y Lu |
In vitro selection of a sodium-specific DNAzyme and its application in intracellular sensing |
None |
10.1073/pnas.1420361112 |
RNA cleavage
|
| 2019 |
L Ma |
J Liu |
From general base to general acid catalysis in a sodium-specific DNAzyme by a guanine-to-adenine mutation |
None |
10.1093/nar/gkz578 |
RNA cleavage
|
| 2019 |
L Ma |
J Liu |
An in Vitro-Selected DNAzyme Mutant Highly Specific for Na under Slightly Acidic Conditions. |
29989277 |
10.1002/cbic.201800322 |
RNA cleavage
|
| 2015 |
S-F Torabi |
Y Lu |
Identification of the Same Na(+)-Specific DNAzyme Motif from Two In Vitro Selections Under Different Conditions. |
26577294 |
10.1007/s00239-015-9715-7 |
RNA cleavage
|
| 2003 |
S H J Mei |
Y Li |
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling. |
12517153 |
10.1021/ja0281232 |
RNA cleavage
|
| 2007 |
J Liu |
Y Lu |
A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity. |
17284609 |
10.1073/pnas.0607875104 |
RNA cleavage
|
| 2011 |
C J Hipolito |
D M Perrin |
Protein-inspired modified DNAzymes: dramatic effects of shortening side-chain length of 8-imidazolyl modified deoxyadenosines in selecting RNaseA mimicking DNAzymes. |
21311779 |
10.1039/c0ob00595a |
RNA cleavage
|
| 2016 |
W Zhou |
J Liu |
An Efficient Lanthanide-Dependent DNAzyme Cleaving 2'-5'-Linked RNA. |
26957420 |
10.1002/cbic.201500690 |
RNA cleavage
|
| 2016 |
Z Shen |
Y Li |
A Catalytic DNA Activated by a Specific Strain of Bacterial Pathogen. |
26676768 |
10.1002/anie.201510125 |
RNA cleavage
|
| 2015 |
R Saran |
J Liu |
Searching for a DNAzyme Version of the Leadzyme. |
26458991 |
10.1007/s00239-015-9702-z |
RNA cleavage
|
| 2013 |
P Wu |
Y Lu |
A DNAzyme-gold nanoparticle probe for uranyl ion in living cells. |
23531046 |
10.1021/ja400150v |
RNA cleavage
|
| 2019 |
Y Wang |
H Yu |
A Novel Small RNA-Cleaving Deoxyribozyme with a Short Binding Arm |
None |
10.1038/s41598-019-44750-x |
RNA cleavage
|
| 2013 |
M Hollenstein |
D M Perrin |
Toward the combinatorial selection of chemically modified DNAzyme RNase A mimics active against all-RNA substrates. |
23485334 |
10.1021/co3001378 |
RNA cleavage
|
| 2001 |
D M Perrin |
C Hélène |
Bridging the gap between proteins and nucleic acids: a metal-independent RNAseA mimic with two protein-like functionalities. |
11456753 |
10.1021/ja003290s |
RNA cleavage
|
| 2009 |
M Hollenstein |
D M Perrin |
A self-cleaving DNA enzyme modified with amines, guanidines and imidazoles operates independently of divalent metal cations (M2+). |
19153138 |
10.1093/nar/gkn1070 |
RNA cleavage
|
| 2020 |
C P M Scheitl |
C Höbartner |
New Deoxyribozymes for the Native Ligation of RNA. |
32796587 |
10.3390/molecules25163650 |
RNA ligation
|
| 1999 |
Y Li |
R R Breaker |
Phosphorylating DNA with DNA. |
10077582 |
10.1073/pnas.96.6.2746 |
DNA phosphorylation
|
| 2018 |
L Gu |
J Liu |
Reselection Yielding a Smaller and More Active Silver-Specific DNAzyme. |
31458180 |
10.1021/acsomega.8b02039 |
RNA cleavage
|
| 2016 |
P-J J Huang |
J Liu |
Distinction of Individual Lanthanide Ions with a DNAzyme Beacon Array |
None |
10.1021/acssensors.6b00239 |
RNA cleavage
|
| 2016 |
W Zhou |
J Liu |
In Vitro Selection of Chromium-Dependent DNAzymes for Sensing Chromium(III) and Chromium(VI). |
27249536 |
10.1002/chem.201601426 |
RNA cleavage
|
| 2019 |
P-J J Huang |
J Liu |
Instantaneous Iodine-Assisted DNAzyme Cleavage of Phosphorothioate RNA. |
30272443 |
10.1021/acs.biochem.8b00900 |
RNA cleavage
|
| 2015 |
M Vazin |
J Liu |
Biochemical Characterization of a Lanthanide-Dependent DNAzyme with Normal and Phosphorothioate-Modified Substrates. |
26356231 |
10.1021/acs.biochem.5b00691 |
RNA cleavage
|
| 2015 |
P-J J Huang |
J Liu |
A new heavy lanthanide-dependent DNAzyme displaying strong metal cooperativity and unrescuable phosphorothioate effect. |
25488814 |
10.1093/nar/gku1296 |
RNA cleavage
|
| 2015 |
P-J J Huang |
J Liu |
Desulfurization Activated Phosphorothioate DNAzyme for the Detection of Thallium. |
26393365 |
10.1021/acs.analchem.5b02568 |
RNA cleavage
|
| 2016 |
P-J J Huang |
J Liu |
In Vitro Selection of a DNAzyme Cooperatively Binding Two Lanthanide Ions for RNA Cleavage. |
27054549 |
10.1021/acs.biochem.6b00132 |
RNA cleavage
|
| 2015 |
W Zhou |
J Liu |
A New Na+‐Dependent RNA‐Cleaving DNAzyme with over 1000‐fold Rate Acceleration by Ethanol |
None |
10.1002/cbic.201500603 |
RNA cleavage
|
| 2017 |
W Zhou |
J Liu |
An Exceptionally Selective DNA Cooperatively Binding Two Ca Ions. |
28087991 |
10.1002/cbic.201600708 |
RNA cleavage
|
| 2018 |
T Yu |
J Liu |
An RNA-Cleaving Catalytic DNA Accelerated by Freezing. |
29537685 |
10.1002/cbic.201800049 |
RNA cleavage
|
| 2016 |
P-J J Huang |
J Liu |
An Ultrasensitive Light-up Cu(2+) Biosensor Using a New DNAzyme Cleaving a Phosphorothioate-Modified Substrate. |
26857405 |
10.1021/acs.analchem.5b04904 |
RNA cleavage
|
| 2015 |
P-J J Huang |
J Liu |
Rational evolution of Cd2+-specific DNAzymes with phosphorothioate modified cleavage junction and Cd2+ sensing. |
25990730 |
10.1093/nar/gkv519 |
RNA cleavage
|
| 2020 |
W Ren |
J Liu |
Selection of a metal ligand modified DNAzyme for detecting Ni. |
32510338 |
10.1016/j.bios.2020.112285 |
RNA cleavage
|
| 2015 |
Rachel Gysbers |
Y Li |
Evolution of an Enzyme from a Noncatalytic Nucleic Acid Sequence. |
26091540 |
10.1038/srep11405 |
RNA cleavage
|
| 2000 |
S W Santoro |
C F Barbas |
RNA Cleavage by a DNA Enzyme with Extended Chemical Functionality |
None |
10.1021/ja993688s |
RNA cleavage
|
| 2018 |
Y Wang |
D M Perrin |
A densely modified M2+-independent DNAzyme that cleaves RNA efficiently with multiple catalytic turnover |
None |
10.1039/C7SC04491G |
RNA cleavage
|
| 2020 |
P-J J Huang |
J Liu |
Target Self-Enhanced Selectivity in Metal-Specific DNAzymes. |
31867832 |
10.1002/anie.201915675 |
RNA cleavage
|
| 2007 |
W Chiuman |
Y Li |
Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design. |
18030352 |
10.1371/journal.pone.0001224 |
RNA cleavage
|
| 2004 |
M A Carrigan |
S A Benner |
Quantitative analysis of a RNA-cleaving DNA catalyst obtained via in vitro selection. |
15350131 |
10.1021/bi049898l |
RNA cleavage
|
| 2006 |
W Chiuman |
Y Li |
Revitalization of six abandoned catalytic DNA species reveals a common three-way junction framework and diverse catalytic cores. |
16480741 |
10.1016/j.jmb.2006.01.036 |
RNA cleavage
|
| 2006 |
W Chiuman |
Y Li |
Evolution of high-branching deoxyribozymes from a catalytic DNA with a three-way junction. |
17052610 |
10.1016/j.chembiol.2006.08.009 |
RNA cleavage
|
| 2015 |
K Tram |
Y Li |
An Efficient Catalytic DNA that Cleaves L-RNA. |
25946137 |
10.1371/journal.pone.0126402 |
RNA cleavage
|
| 2002 |
P Ordoukhanian |
G F Joyce |
RNA-cleaving DNA enzymes with altered regio- or enantioselectivity. |
12381192 |
10.1021/ja027467p |
RNA cleavage
|
| 2004 |
K Schlosser |
Y Li |
Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection. |
15274624 |
10.1021/bi049757j |
RNA cleavage
|
| 2006 |
K Schlosser |
Y Li |
Characterization of long RNA-cleaving deoxyribozymes with short catalytic cores: the effect of excess sequence elements on the outcome of in vitro selection. |
16682452 |
10.1093/nar/gkl276 |
RNA cleavage
|
| 2002 |
P J Bruesehoff |
Y Lu |
Improving metal ion specificity during in vitro selection of catalytic DNA. |
12052183 |
10.2174/1386207023330264 |
RNA cleavage
|
| 2012 |
K E Nelson |
Y Lu |
The importance of peripheral sequences in determining the metal selectivity of an in vitro-selected Co(2+) -dependent DNAzyme. |
22250000 |
10.1002/cbic.201100724 |
RNA cleavage
|
| 2008 |
K Schlosser |
Y Li |
In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine-pyrimidine junctions. |
18644842 |
10.1093/nar/gkn396 |
RNA cleavage
|
| 2001 |
A R Feldman |
D Sen |
A new and efficient DNA enzyme for the sequence-specific cleavage of RNA. |
11800557 |
10.1006/jmbi.2001.5058 |
RNA cleavage
|
| 2004 |
A V Sidorov |
D M Williams |
Sequence-specific cleavage of RNA in the absence of divalent metal ions by a DNAzyme incorporating imidazolyl and amino functionalities. |
15004246 |
10.1093/nar/gkh326 |
RNA cleavage
|
| 2019 |
L Yang |
R Pei |
Exploration of Catalytic Nucleic Acids on Porphyrin Metalation and Peroxidase Activity by in Vitro Selection of Aptamers for N-Methyl Mesoporphyrin IX. |
30602113 |
10.1021/acscombsci.8b00129 |
Porphyrin metalation
|
