PubMed ID: 31867832
Abstract:
Highly selective recognition of metal ions by rationalligand design is challenging, and simple metal binding bybiological ligands is often obscured by nonspecific interactions.In this work, binding-triggered catalysis is used and metalselectivity is greatly increased by increasing the number ofmetal ions involved, as exemplified in a series of in vitroselected RNA-cleaving DNAzymes. The cleavage junction ismodified with a glycyl–histidine-functionalized tertiary aminemoiety to provide multiple potential metal coordination sites.DNAzymes that bind 1, 2, and 3 Zn2+ions, increased theirselectivity for Zn2+over Co2+ions from approximately 20-,1000-, to 5000-fold, respectively. This study offers importantinsights into metal recognition by combining rational liganddesign and combinatorial selection, and it provides a set of newDNAzymes with excellent selectivity for Zn2+ions.
DNAzymes linked to this article:
Name | Isolated sequence | Length | Reaction |
---|---|---|---|
Zn01 | TGTCTCTGACCTCTAGAGTGGAGCAAATCGTAAGGATCCAGTGGACGAAA | 50 | RNA cleavage |
Zn03 | GAGTAATAGTCAAGATATAACCAGACAAATCCTTCTGCACGGAGGACAAA | 50 | RNA cleavage |
Zn05 | GATGAGAGGACCAATCACACAAATATGTGAGGTGCTGGACTCCAGCGGGA | 50 | RNA cleavage |
Zn06 | ACGGAACCAGAGGACGAAATAGATGACTTGAAAATCCAATAACGTATCCA | 50 | RNA cleavage |
Zn09 | CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATTCTAGATGTAAGTAAATCTTCTCTCAGCGAGACGAAATAGTGACGAGGATAAGGGTGGTCGGTAAGCTTGGCAC | 119 | RNA cleavage |
Zn10 | CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCCTTGATGTGAGTAAATCTTCTCTCAGCGAGACGAAATAGTGACGAGGATAAGGGTGGTCGGTAAGCTTGGCAC | 119 | RNA cleavage |
Zn08 | CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTATGGTACCCATAAGTTAATAGCCAGGAAGTAAGGGGGAGGGAAGACCAGTTAGTGACGGTAAGCTTGGCAC | 119 | RNA cleavage |
Zn04 | CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGAGCGGATATCCGGAGTGGATGAGAGTCCATTGAGAACCCAGTGGAACGTTAGTGACGGTAAGCTTGGCAC | 119 | RNA cleavage |
Zn02 | CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGTGGAAGATCATCAGTATTTCATTAGGTTGGAGCAAGAGCGGTTCCAGTTAGTGACGGTAAGCTTGGCAC | 119 | RNA cleavage |
Zn07 | CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTATACACGGAATCACGGTGTATAAGTAGTGAAAGTAAAGAGTGTTGACAGTTAGTGACGGTAAGCTTGGCAC | 119 | RNA cleavage |