DNAmoreDB - A Database of Deoxyribozymes

Published on 2020 in Angew. Chem. Int. Ed. Engl. volume 59 issue 9.

PubMed ID: 31867832

DOI:10.1002/anie.201915675

Abstract:

Highly selective recognition of metal ions by rationalligand design is challenging, and simple metal binding bybiological ligands is often obscured by nonspecific interactions.In this work, binding-triggered catalysis is used and metalselectivity is greatly increased by increasing the number ofmetal ions involved, as exemplified in a series of in vitroselected RNA-cleaving DNAzymes. The cleavage junction ismodified with a glycyl–histidine-functionalized tertiary aminemoiety to provide multiple potential metal coordination sites.DNAzymes that bind 1, 2, and 3 Zn2+ions, increased theirselectivity for Zn2+over Co2+ions from approximately 20-,1000-, to 5000-fold, respectively. This study offers importantinsights into metal recognition by combining rational liganddesign and combinatorial selection, and it provides a set of newDNAzymes with excellent selectivity for Zn2+ions.



DNAzymes linked to this article:

Name Isolated sequence Length Reaction
Zn01 TGTCTCTGACCTCTAGAGTGGAGCAAATCGTAAGGATCCAGTGGACGAAA      50 RNA cleavage
Zn03 GAGTAATAGTCAAGATATAACCAGACAAATCCTTCTGCACGGAGGACAAA      50 RNA cleavage
Zn05 GATGAGAGGACCAATCACACAAATATGTGAGGTGCTGGACTCCAGCGGGA      50 RNA cleavage
Zn06 ACGGAACCAGAGGACGAAATAGATGACTTGAAAATCCAATAACGTATCCA      50 RNA cleavage
Zn09 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATTCTAGATGTAAGTAAATCTTCTCTCAGCGAGACGAAATAGTGACGAGGATAAGGGTGGTCGGTAAGCTTGGCAC      119 RNA cleavage
Zn10 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCCTTGATGTGAGTAAATCTTCTCTCAGCGAGACGAAATAGTGACGAGGATAAGGGTGGTCGGTAAGCTTGGCAC      119 RNA cleavage
Zn08 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTATGGTACCCATAAGTTAATAGCCAGGAAGTAAGGGGGAGGGAAGACCAGTTAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
Zn04 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGAGCGGATATCCGGAGTGGATGAGAGTCCATTGAGAACCCAGTGGAACGTTAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
Zn02 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGTGGAAGATCATCAGTATTTCATTAGGTTGGAGCAAGAGCGGTTCCAGTTAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
Zn07 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTATACACGGAATCACGGTGTATAAGTAGTGAAAGTAAAGAGTGTTGACAGTTAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
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