DNAmoreDB - A Database of Deoxyribozymes

Published on 2014 in Anal. Chem. volume 86 issue 3.

PubMed ID: 24383540

DOI:10.1021/ac403762s

Abstract:

Metal-ion detection and speciation analysis is crucial for environmental monitoring. Despite the importance of lanthanides, few sensors are available for their detection. DNAzymes have been previously used to detect divalent metals, while no analytical work was carried out for trivalent and tetravalent ions. Herein, in vitro selection was performed using a Ce4+ salt as the target metal, and a new DNAzyme (named Ce13) with a bulged hairpin structure was isolated and characterized. Interestingly, Ce13 has almost no activity with Ce4+ but is highly active with all trivalent lanthanides and Y3+, serving as a general probe for rare earth metals (omitting Sc). A DNAzyme beacon was engineered detecting down to 1.7 nM Ce3+ (240 parts per trillion), and other lanthanides showed similar sensitivity. The feasibility of metal speciation analysis was demonstrated by measuring the reduction of Ce4+ to Ce3+.



DNAzymes linked to this article:

Name Isolated sequence Length Reaction
Ce13 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGAGCCATAGGTCAAAGGTAGGTGCGGGTCGTATCATATCGACTAGTTATAGTGACGGTAAGCTTGGCAC      118 RNA cleavage
Ce13a TTTCGCCATAGGTCAAAGGTGGGTGCGAGTCGTATCATATCGACTCGTTATAGTGACTCGT      61 RNA cleavage
Ce13b TTTCGCCATAGGTCAAAGGTGGGTGCGGGTCGTTTTTCGACTAAGTTATAGTGACTCGT      59 RNA cleavage
Ce13c TTTCGCCATAGGTCAAAGGTGGGTGCGTTATAGTGACTCGT      41 RNA cleavage
Ce13d TTTCGCCATAGGTCAAAGGTGGGTGCGAGTTTTTACTCGTTATAGTGACTCGT      53 RNA cleavage
Ce20 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATTTGGAGCCATAGGTCAAAGGTGGGTGCGTGTCGTATCATATCGACTAAGTTATAGTGACGGTAAGCTTGGCAC      118 RNA cleavage
Ce22 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATTGGAGCCATAGGTCAAAGGTAGGTGCGGTCGTATCATATCGACTAAGTTATAGTGACGGTAAGCTTGGCAC      116 RNA cleavage
Ce6 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATGGAGCCATAGGTCAAAGGTAGGTGCGAGTCGTATCATATCGACTAAGTTATAGTGACGGTAAGCTTGGCAC      116 RNA cleavage
Ce4 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGAGCCATAGGTCAAAGGTAGGTGCGGGTCGTATCATATCGACTAAGTTATAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
Ce34 CTGCAGAATTCTAAACGAGTCACTATAGGAAGATGGCGAAACATCCTGGAGCCATAGGTCAAAGGTAGGTGCGGGTCGTATCATATCGACTAGTTATAGTGACGGTAAGCTTGGCAC      117 RNA cleavage
Ce9 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGAGCCATAGGTCAAAGGTAGGTGCGGGTCGTATCATATCGACYAGTTATAGWGACGGTAAGCTTGGCAC      118 RNA cleavage
Ce3 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGAGCCATAGGTCAAAGGTAGGTGCGGGTCGTATCATATCGACCAGTTATAGTGACGGTAAGCTTGGCAC      118 RNA cleavage
Ce11 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTGGAGCCATAGGTCAAAGGTWGGTGCKGGYSKWWYMWWWYCRMYWAGTTATAGTGACGGTAAGCTTGGCAC      118 RNA cleavage
Ce15 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTACAAGGAACAATAATGGGGTCGGGTATATTGTCGTACCGGTTATAGTGACGGTAAGCTTGGCAC      113 RNA cleavage
Ce5 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTACGAACGGTTAAGAAAAGTGACTTATCCAGTGGTTATCTGACTAGTGTTAGTGACGGTAAGCTTGGCAC      118 RNA cleavage
Ce2 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTACGACGTCATCCCAAACAGGCCATTAAAAAAAGGATATAAGGGTTATAGTGACGGTAAGCTTGGCAC      116 RNA cleavage
Ce16 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTACGACGTCATCCTAAACAGGCCATTAAAAAAAGGATATAAGGGTTATAGTGACGGTAAGCTTGGCAC      116 RNA cleavage
Ce12 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTAACGAGTGTAGAATCTCCCTGAAAGGCAGAATGCAAAGTACACGGTTATAGTGACGGTAAGCTTGGCAC      117 RNA cleavage
Ce23 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTAACGAGTGTAGAATCTCCCTGAAAGGCAGAATGCAAAGTACACGGTTATAGTGACGGTAAGCTTGGCAC      117 RNA cleavage
Ce10 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTACGAGAGTAGTCATTTAAATTAACAAAGTACACTGACGCAAAACGGTTATAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
Ce14 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTTATCGCGTAAATGACCGTATTCATGCGAATAGGACATACGGATAGTGACGGTAAGCTTGGCAC      112 RNA cleavage
Ce32 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTTTACGACATCCGGGGCATGAACCACGATGGCCATATATAACGAATGGGTTATAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
Ce7 CTGCAGAATTCTAATACGAGTCACTATAGGAAGATGGCGAAACATCTCACAAGGGGGTGTATTATTCACGCGGATAACGTTAATACATGGTACGGTTATAGTGACGGTAAGCTTGGCAC      119 RNA cleavage
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