DNAmoreDB - A Database of Deoxyribozymes

DNAzyme description

 Reaction  Substrates Product  Metal ion  Seq description
Thymine dimer repair X: T=T is a thymine dimer
S: AGGATCTACATGTAT=TGTGTGCGTACGAGTATATGG-N40-GTCTCAATCGGTCTGTATC
repaired sequences light
Serotonin
N 40
 Buffer conditions
20 mM Sodium phosphate pH 7.0, 40 mM NaCl, 10 μM Serotonin
 kcat/ kobs
kobs = 0.20 min-1
 Catalytic region of the DNAzyme
TAAGTCGGATGGAGGGATCCGTTGGCACATGTAGTCACGT
Notes
Self repair of the Thymine dimer located on the 5'-end of the DNA library (primer binding region).

 Reported in...

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
2009 R E Thorne D Sen A deoxyribozyme, Sero1C, uses light and serotonin to repair diverse pyrimidine dimers in DNA. 19281822 10.1016/j.jmb.2009.02.064 Thymine dimer repair

 Related Publications

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
2004 D J-F Chinnapen D Sen A deoxyribozyme that harnesses light to repair thymine dimers in DNA. 14691255 10.1073/pnas.0305943101 Thymine dimer repair
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