DNAmoreDB - A Database of Deoxyribozymes

DNAzyme description

 Reaction  Reacting groups  Substrates Product
Porphyrin metalation Group 1 - 2'-OH

Group 2 - vicinal phosphate

S: mesoporphyrin IX (MPIX)
Cu-MPIX or Zn-MPIX
 Buffer conditions
100 mM Tris pH 7.4, 200 mM NaOAc, 25 mM KOAc, 10 mM Mg(OAc)2, 5% DMSO, 0.5% Triton X-100, 1 mM Cu(OAc)2 or Zn(OAc)2
 kcat/ kobs
kcat = 13.7 h-1
 Catalytic region of the DNAzyme
TCGTGGGTCATTGTGGGTGGGTGTGGCTGGTCC
Notes
The related publication by Li Y and Sen D (1997) reports an extensive characterization of the previously reported porphyrin metalating PS5.ST1, including additional substrates (MPIX, PPIX, and DPIX) and optimized DNAzyme sequences.

 Reported in...

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
1996 Y Li D Sen A catalytic DNA for porphyrin metallation None 10.1038/nsb0996-743 Porphyrin metalation

 Related Publications

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
1997 Y Li D Sen Toward an efficient DNAzyme. 9154943 10.1021/bi962694n Porphyrin metalation
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