DNAmoreDB - A Database of Deoxyribozymes

DNAzyme description

 Reaction  Reacting groups  Substrates Product  Metal ion Linkage  Seq description
DNA ligation Group 1 - 3'-phosphorimidazolide

Group 2 - 5'-OH

L: AAGCATCTCAAGC
R: GGAACACTATCCG
activated substrate L ligated to 5'-hydroxyl substrate R Zn2+
Cu2+
phosphodiester N *
 Buffer conditions
30 mM HEPES pH 7.4, 600 mM KCl, 50 mM MgCl2, 1 mM ZnCl2
 kcat/ kobs
kobs = 3.4 h-1
 Catalytic region of the DNAzyme
CGGATAGTGTTCTTTCGCTAGACCATGTGACGCATGGTGAGATGCTT
Notes
Designed based on the consensus sequence from clones Seq1 to Seq 21

 Reported in...

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
1995 B Cuenoud J W Szostak A DNA metalloenzyme with DNA ligase activity. 7791880 10.1038/375611a0 DNA ligation

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