DNAmoreDB - A Database of Deoxyribozymes

DNAzyme description

 Reaction  Reacting groups  Substrates Product  Metal ion Linkage  Seq description
Covalent Modification of Amino Acid Side Chains Group 1 - Tyr

Group 2 - 5'-triphosphate

L: GGATAATACGXTTCACTGCG
R: GGAAGAGAUGGCGACGG
X: Tyr
nucleopeptide linkage Mn2+
Mg2+
Tyr-RNA N *
 Buffer conditions
50 mm CHES pH 9.0, 150 mM NaCl, 2 mM KCl, 40 mM MgCl2
 Yield (%) kcat/ kobs
72 kobs = 0.06 min-1
 Catalytic region of the DNAzyme
CACGACAGCTAGAAAGAGGTCTAAAAAGTACTCCGCAGTGAGCGACGCG
Notes
Pool N33-CGCAGTGAG-N7, the deoxyribozyme's sequence is anotated with the 9-nt linker between the two initially randomized regions

 Reported in...

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
2008 P I Pradeepkumar Scott K Silverman DNA-catalyzed formation of nucleopeptide linkages. 18214866 10.1002/anie.200703676 Covalent Modification of Amino Acid Side Chains

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