DNAmoreDB - A Database of Deoxyribozymes

DNAzyme description

 Reaction  Reacting groups  Substrates Product Linkage  Seq description
RNA cleavage Group 1 - 2'-OH of rG

Group 2 - vicinal phosphate

S: cleavage in cis
specific cleavage at desired position RNA phosphodiester N 50
 Buffer conditions
100 mM KCl, 300 mM NaCl, 15 mM MnCl2, 15 mM MgCl2, 55 mM HEPES pH 7.5
 Catalytic region of the DNAzyme
ATCTTTTCTATCAACCCCAAAACTTTGGCACAATGAAGTGGGTGACTTTT
Notes
The starting sequence for the experiment was chose at random, and corresponds to the first 50 nucleotides of the Bos taurus (cattle) albumin gene. The goal in this case was to evolve a catalytic sequence from a non-catalytic one. Trans-cleaving versions of G2501 were also active.

 Reported in...

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
2015 Rachel Gysbers Y Li Evolution of an Enzyme from a Noncatalytic Nucleic Acid Sequence. 26091540 10.1038/srep11405 RNA cleavage

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