tRNAmodpred


tRNAmodpred is a method for predicting modifications in tRNA using the MODOMICS database of RNA modification pathways as a reference.

The program takes as an input a set of unmodified tRNA sequences and a set of protein sequences corresponding to a proteome of a cell, identifies all RNA residues that correspond to known modification sites with known enzymes, finds homologs of known tRNA modification enzymes, and maps the predictions onto known pathways of RNA modification, to identify theoretically possible modification reactions for all positions in query tRNAs.

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Check tRNAmodpred predictions for model organisms:

Escherichia coli Bacillus subtilis Mycoplasma capricolum Haloferax volcanii Saccharomyces cerevisiae Homo sapiens

Click to download tRNAmodpred if you want to run it locally



This project has been co-financed with the European Union funds by the European Social Fund