COMPUTER HARDWARE:

Computing clusters:
1. 32 bit Computing Cluster of 18 dual-CPU nodes (36 processors): 24x Intel Xeon 3.06 GHz, 12x Intel Xeon 2.4 GHz, 40G RAM, 1.5T 15k SAS NAS, Debian GNU/Linux 4.0, SGE 6.0u8
2. 64 bit Computing Cluster of 20 dual-CPU nodes (40 processors): 40 x AMD Opteron 248 2.2GHz, 40G RAM, 1.5T 15k SAS NAS, Debian GNU/Linux 4.0, SGE 6.0u8

Servers:
Sun Microsystems Sun Fire v210 Sparc, SunOS 5.9
Sun Microsystems Sun Fire X4200 2x Opteron 285; 8GB RAM; 2x73GB SAS 10k
IBM Storage DS3200 9TB SAS/SAS storage (20x450GB 15k SAS), 2G Redundant RAID controller
IBM System x3650 1x Xeon L5420; 2GB RAM; 2x143GB SAS 15k RAID
IBM System x345 2x Xeon 3000 Series 2.2GHz; 4GB RAM; 36GB 15k SCSI RAID
2x IBM System x336 2x Xeon 3000 Series 3.0GHz; 4GB RAM, 2x73GB 10k SCSI RAID
IBM System x330 2x Pentium 3 1.4GHz; 1GB RAM; 36GB 10k SCSI RAID
IBM System x232 Pentium 3 800MHz; 1GB RAM; 4x73GB 15k SCSI RAID
IBM Netfinity 5600 2x Pentium 3 1.0GHz; 1,5GB RAM; 6x36GB SCSI RAID
HP Proliant DL360 Xeon 3000 Series 2.8GHz; 4GB RAM; 36GB 15k SCSI RAID
Dual-CPU Opteron 270 2GHz, 6GB RAM, 74GB SCSI 15k + 12TB SATA RAID
Dual-CPU Opteron 246 2GHz, 2GB RAM, 6GB SATA RAID
Dual-CPU Opteron 270 2GHz, 16GB RAM, 3TB SATA RAID
Dual-CPU Opteron 270 2GHz, 4GB RAM, 2x147GB SCSI 15k RAID
Dual-CPU Xeon 5345 2.33GHz, 8GB RAM, 320GB HDD
Dual-CPU Xeon 5110 1.60GHz, 4GB RAM, 2x73 + 2x36 GB SCSI 10/15k RAID
Dual-CPU Xeon 5130 1.60GHz, 16GB RAM, 300GB SATA RAID
Celeron 2.8GHz, 1GB RAM, 80GB HDD
Shared disk capacity: 9TB (SAS/SAS) + 3TB (SAS/GbE) + 18TB backup
Internet Access – 200Mbit/s (fibre)
Local Network – Gigabit Ethernet (3Com & HP equipment)

Workstations:
4x Dual-CPU Intel Xeon E5300 Series, 16G RAM, 147G SAS 15k, 500G - Linux
3x Intel Core 2 Q9950, 4G RAM, 1TB HDD - Linux
6x Athlon XP 2800+, 2GB RAM - Linux
1x Intal Xeon E5420, 16GB RAM, 500GB HDD - Linux
1x Intel Core 2 Q8300, 4GB RAM, 1 TB HDD - Linux
1x Intel Dual-Core E6300, 4GB RAM, 1TB HDD - Linux
3x Intel Dual-Core E6300, 4GB RAM, 1TB HDD - Windows XP Pro
1x AMD Opteron 265, 3GB RAM, 400 GB HDD - Widnows Server 2003
1x AMD Opteron 268, 5GB RAM, 160 GB HDD - Linux
1x AMD Opteron 246, 2GB RAM, 2x 74 GB SAS - Linux
6x various PCs - Windows XP Pro (dedicated to wet lab hardware)
2x various PCs - Widnows XP

Laptops:
2x IBM T61p Thinkpad - Windows XP Pro
Amilo Pro V2060 Fujitsu-Siemens Laptop - Windows XP Pro
Eurocom P3 1GHz - Windows XP Pro
2x MSI u100 Notebook - dual boot Linux / Windows XP Pro

Other:
Digital Projector S40, 3M, USA
Desktop Scanner CanoScan 3200F, Canon Inc., Japan
Hewlett Packard LaserJet 1150 PCL network printer
Hewlett Packard Color LaserJet 1500 network printer
Lexmark Z31 Color InkJet network printer
HP Color Laserjet CM 2320 FXI MFP

COMPUTER SOFTWARE:

OS:
Production: mainly i686/x86_64/IA64 Debian GNU/Linux 4.0, SunOS 5.9 and Slackware
Testing: Gentoo/Slackware/Ubuntu Linux, MS Windows 2003
Workstations: Ubuntu Linux, Canonical Ltd., WINDOWS XP Professional, Microsoft Corp., USA

Molecular Modeling:
AMBER, University of California, San Francisco, USA
CABS, Warsaw University, Warsaw, Poland
CHARMM, Harvard University, Cambridge, USA
CNS, Yale University, New Haven, USA
HYPERCHEM 7.1, Hypercube, Inc., Gainesville, USA
INSIGHT II, Catalyst, Accelrys Software Inc., USA
MODELLER 9v1, University of California, San Francisco, USA
MOLSCRIPT 2.1.2, Avatar Software AB, Sweden
MC-SYM 3.3.2. UniversitĂŠ de MontrĂŠal, Canada
NAMD 2.6, Beckman Institute, USA
REFINER, Warsaw University, Warsaw, Poland
ROSETTA, University of Washington, Seattle, USA
SCULPT 3.0, Elsevier MDL, San Ramon, USA
SCWRL 3.0, Fox Chase Cancer Center, Philadelphia, USA
SYBYL 7.3, Tripos, USA
UNRES, University of Gdansk, Gdansk, Poland

Docking:
AUTODOCK, The Scripps Research Institute, La Jolla, USA
BIGGER, Universidade Nova de Lisboa, Caparica, Portugal
DOCK, University of California, San Francisco, USA
GRAMM, University of Kansas, Lawrence, USA
HADDOCK, Utrecht University, the Netherlands
RDOCK, Boston University, Boston, USA
SURFLEX, BioPharmics LLC, USA
ZDOCK, Boston University, Boston, USA

Statistical Analysis:
Statistica 7 & Data Mining, StatSoft., USA

Office:
ENDNOTE, ISI ResearchSoft, Berkeley, USA
MS Office XP, Microsoft Corp., USA
VMware Workstation 5, Mware, Inc., USA
CrossOver Office 4.2, CodeWeavers, USA

WET LAB HARDWARE:

Protein and nucleic acid biochemistry:
CD Spectropolarimeter JASCO J-810, Jasco, Japan
VP-ITC Isothermal Titration Calorimeter, MicroCal, USA
VP-DSC Differential Scanning Calorimeter, MicroCal, USA
ASM-800 DNA Synthesizer, Biosset Ltd., Russia
OPS-201 Oligonucleotide Purification System, Biosset Ltd., Russia
ABI Prism 310 Genetic Analyzer, Capillary DNA Sequencer, Applied Biosystems, USA
Minicycler, MJ Reasearch, USA
MJ Mini Personal Thermal Cycler, Bio-Rad Laboratories, Inc., USA
C1000 Thermal Cycler Chassis, Bio-Rad Laboratories, Inc., USA
2x BioLogic LP Chromatography System, Bio-Rad Laboratories, Inc., USA
AKTA Purifier, GE Healthcare, USA
Immersion Circulator 7312, PolyScience, USA

Cell cultures:
Incubated orbital shaker Unitron - plus, Infors AG, Switzerland
French press FA-080 AE1, Thermo Electron Corporation, USA

Electrophoresis:
DNA - horizontal gel electrophoresis systems:
2x SUBDNA, Kucharczyk TE, Poland
SUBMINI, Kucharczyk TE, Poland
SHU13, Sigma-Aldrich, USA
SHU6, Sigma-Aldrich, USA
Protein - vertical gel electrophoresis systems:
2x PROTEAN II, Bio-Rad Laboratories, Inc., USA,
MINI PROTEAN tetra electrophoresis system, Bio-Rad Laboratories, Inc., USA,
MINIPOL 2, Kucharczyk TE, Poland
Power supplies:
2x E844, Consort nv, Belgium
E132, Consort nv, Belgium

Protein blotting:
Mini Trans-Blot Cell, Bio-Rad Laboratories, Inc., USA,
2x Semi-dry blotters SV20-SDB, Sigma-Aldrich, USA
96 well Dot-Blot Hybridization Manifold, SciePlas Ltd., UK

Microcentrifuges:
Mikro 20, Hettich, Germany
5415 D, Eppendorf, Germany
5804 R, Eppendorf, Germany
5418, Eppendorf, Germany
5117R, Eppendorf, Germany

Other equipment:
pH 211 microprocessor pHMetr, Hanna Instruments, USA
Water Bath (Model WB), Memmert, Germany
Unimax shaker, Heidolph Instruments GmbH & Co. KG, Germany
2xThermomixer comfort, Eppendorf, Germany
Deepfreezer ULT 2186-3, Revco Thermo Electron Corporation, USA