GDFuzz3D: protein 2D map to 3D structure retrieval service     



Standalone version of GDFuzz3D

Dataset PSICOV (150 proteins)

PDB reference structures
Reference PconsC fuzzy contact maps
GDFuzz3D models
PconsFold models
Distance maps as intermediate output from GDFuzz3D
Model vs model comparison measures: RMSD, TM-score


Dataset 45 - TBM targets from CASP10

PDB reference structures
Reference MULTICOM fuzzy contact maps
MULTICOM maps transformed to FT-COMAR input format (binary)
GDFuzz3D models
FT-COMAR models
Model vs model comparison measures: RMSD, TM-score


Dataset 10 - TBM targets from CASP10 for which MULTICOM produced good contact maps

PDB reference structures
Reference MULTICOM fuzzy contact maps
MULTICOM maps transformed to FT-COMAR input format (binary)
GDFuzz3d models
FT-COMAR models
Model vs model comparison measures: RMSD, TM-score


Testset 799 based on filtered PB database

PDB ids
PDB reference structures
Contact maps
Distance maps


Contact: Michal J. Pietal, Lukasz P. Kozlowski, Janusz M. Bujnicki,
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw