23Smethyl 
Superfamily of 23Smethyl 
2H

structured_simple

1 

5S_rRNA 
Superfamily of 5S_rRNA 
rRNA

structured_complex

4 

5_ureB_sRNA 
Superfamily of 5_ureB_sRNA 
complex unclassified

structured_complex

1 

6C 
Superfamily of 6C 
pseudoknot_simple

structured_simple

1 

6S 
Superfamily of 6S 
hairpin

structured_simple

1 

6SFlavo 
Superfamily of 6SFlavo 
hairpin

structured_simple

1 

7SK 
Superfamily of 7SK 
2H

structured_simple

2 

Aar 
Superfamily of Aar 
complex unclassified

structured_complex

1 

AbsR11 
Superfamily of AbsR11 
complex unclassified

structured_complex

1 

AbsR25 
Superfamily of AbsR25 
2H

structured_simple

1 

AbsR28 
Superfamily of AbsR28 
complex unclassified

structured_complex

1 

ACAT 
Superfamily of ACAT 
3H

structured_simple

1 

Acido1 
Superfamily of Acido1 
2H

structured_simple

1 

AcidoLenti1 
Superfamily of AcidoLenti1 
2H

structured_simple

1 

Actinopnp 
Superfamily of Actinopnp 
hairpin

structured_simple

1 

adapt33_1 
Superfamily of adapt33_1 
2H

structured_simple

1 

adapt33_2 
Superfamily of adapt33_2 
hairpin

structured_simple

1 

adapt33_3 
Superfamily of adapt33_3 
4WJ

structured_simple

1 

adapt33_4 
Superfamily of adapt33_4 
hairpin

structured_simple

1 

AEV_CRE 
Superfamily of AEV_CRE 
hairpin

structured_simple

1 

AfaR 
Superfamily of AfaR 
3WJ

structured_simple

1 

Afu_182 
Superfamily of Afu_182 
2H

structured_simple

1 

Afu_203 
Superfamily of Afu_203 
2H

structured_simple

1 

Afu_254 
Superfamily of Afu_254 
2H

structured_simple

1 

Afu_309 
Superfamily of Afu_309 
complex unclassified

structured_complex

1 

AgvB 
Superfamily of AgvB 
3H

structured_simple

1 

AilA_thermometer 
Superfamily of AilA_thermometer 
2H

structured_simple

1 

Alfamo_CPB 
Superfamily of Alfamo_CPB 
complex unclassified

structured_complex

1 

ALIL 
Superfamily of ALIL 
2H

structured_simple

1 

Alpha_RBS 
Superfamily of Alpha_RBS 
complex unclassified

structured_complex

1 

AMV_RNA1_SL 
Superfamily of AMV_RNA1_SL 
hairpin

structured_simple

1 

AniS 
Superfamily of AniS 
2H

structured_simple

1 

AntiQ_RNA 
Superfamily of AntiQ_RNA 
3WJ

structured_simple

1 

Antizyme_FSE 
Superfamily of Antizyme_FSE 
pseudoknot_simple

structured_simple

1 

ApoB_5_CRE 
Superfamily of ApoB_5_CRE 
complex unclassified

structured_complex

1 

ar14 
Superfamily of ar14 
3H

structured_simple

1 

ar35 
Superfamily of ar35 
3H

structured_simple

1 

ar45 
Superfamily of ar45 
4WJ

structured_simple

1 

ar7 
Superfamily of ar7 
3H

structured_simple

1 

ar9 
Superfamily of ar9 
complex unclassified

structured_complex

1 

ArcZ 
Superfamily of ArcZ 
2H

structured_simple

1 

AS1726 
Superfamily of AS1726 
2H

structured_simple

1 

AS1890 
Superfamily of AS1890 
4WJ

structured_simple

1 

asd 
Superfamily of asd 
complex unclassified

structured_complex

1 

AsdA 
Superfamily of AsdA 
2H

structured_simple

1 

ASdes 
Superfamily of ASdes 
3WJ

structured_simple

1 

ASpks 
Superfamily of ASpks 
2H

structured_simple

1 

AsrC 
Superfamily of AsrC 
complex unclassified

structured_complex

1 

astro_FSE 
Superfamily of astro_FSE 
pseudoknot_simple

structured_simple

1 

asX1 
Superfamily of asX1 
3WJ

structured_simple

1 

asX2 
Superfamily of asX2 
2H

structured_simple

1 

asX3 
Superfamily of asX3 
3WJ

structured_simple

1 

asX4 
Superfamily of asX4 
3WJ

structured_simple

1 

asX6 
Superfamily of asX6 
2H

structured_simple

1 

AsxR 
Superfamily of AsxR 
2H

structured_simple

1 

atoC 
Superfamily of atoC 
2H

structured_simple

1 

ATPC 
Superfamily of ATPC 
3WJ

structured_simple

1 

Atu_At1 
Superfamily of Atu_At1 
complex unclassified

structured_complex

1 

Atu_C10 
Superfamily of Atu_C10 
2H

structured_simple

1 

Atu_C3 
Superfamily of Atu_C3 
complex unclassified

structured_complex

1 

Atu_C4 
Superfamily of Atu_C4 
2H

structured_simple

1 

Atu_C6 
Superfamily of Atu_C6 
2H

structured_simple

1 

Atu_C7 
Superfamily of Atu_C7 
2H

structured_simple

1 

Atu_C8 
Superfamily of Atu_C8 
3WJ

structured_simple

1 

Atu_C9 
Superfamily of Atu_C9 
2H

structured_simple

1 

Atu_L1 
Superfamily of Atu_L1 
complex unclassified

structured_complex

1 

Atu_L6 
Superfamily of Atu_L6 
3H

structured_simple

1 

Atu_Ti1 
Superfamily of Atu_Ti1 
3H

structured_simple

1 

Atu_Ti3 
Superfamily of Atu_Ti3 
hairpin

structured_simple

1 

Atu_Ti4 
Superfamily of Atu_Ti4 
hairpin

structured_simple

1 

Avalong_thermometer 
Superfamily of Avalong_thermometer 
3WJ

structured_simple

1 

Avashort_thermometer 
Superfamily of Avashort_thermometer 
3H

structured_simple

1 

b55 
Superfamily of b55 
2H

structured_simple

1 

bablM 
Superfamily of bablM 
2H

structured_simple

1 

babR_5UTR 
Superfamily of babR_5UTR 
3WJ

structured_simple

1 

Bacillaceae1 
Superfamily of Bacillaceae1 
2H

structured_simple

1 

Bacillusplasmid 
Superfamily of Bacillusplasmid 
hairpin

structured_simple

1 

Bacteroidales1 
Superfamily of Bacteroidales1 
3WJ

structured_simple

1 

Bacteroides1 
Superfamily of Bacteroides1 
2H

structured_simple

1 

Bacteroidtrp 
Superfamily of Bacteroidtrp 
hairpin

structured_simple

1 

BaMV_CRE 
Superfamily of BaMV_CRE 
4H

structured_simple

1 

BASRCI153 
Superfamily of BASRCI153 
complex unclassified

structured_complex

1 

BASRCI27 
Superfamily of BASRCI27 
3WJ

structured_simple

1 

BASRCI337 
Superfamily of BASRCI337 
complex unclassified

structured_complex

1 

BASRCI408 
Superfamily of BASRCI408 
complex unclassified

structured_complex

1 

BASRCI414 
Superfamily of BASRCI414 
complex unclassified

structured_complex

1 

BASRCII26 
Superfamily of BASRCII26 
complex unclassified

structured_complex

1 

Betaproteobacteria_toxic_sRNA 
Superfamily of Betaproteobacteria_toxic_sRNA 
2H

structured_simple

1 

bicoid_3 
Superfamily of bicoid_3 
complex unclassified

structured_complex

1 

BjrC1505 
Superfamily of BjrC1505 
complex unclassified

structured_complex

1 

BjrC174 
Superfamily of BjrC174 
3WJ

structured_simple

1 

BjrC68 
Superfamily of BjrC68 
2H

structured_simple

1 

BjrC80 
Superfamily of BjrC80 
4H

structured_simple

1 

BLi_r0872 
Superfamily of BLi_r0872 
hairpin

structured_simple

1 

blv_FSE 
Superfamily of blv_FSE 
pseudoknot_simple

structured_simple

1 

BLV_package 
Superfamily of BLV_package 
2H

structured_simple

1 

BMsr0117 
Superfamily of BMsr0117 
hairpin

structured_simple

1 

BMV3_UPDPK1 
Superfamily of BMV3_UPDPK1 
pseudoknot_simple

structured_simple

1 

BMV3_UPDPK3 
Superfamily of BMV3_UPDPK3 
pseudoknot_simple

structured_simple

1 

Bp1_162 
Superfamily of Bp1_162 
2H

structured_simple

1 

Bp1_684 
Superfamily of Bp1_684 
3WJ

structured_simple

1 

Bp1_738 
Superfamily of Bp1_738 
complex unclassified

structured_complex

1 

Bp1_781 
Superfamily of Bp1_781 
complex unclassified

structured_complex

1 

Bp2_287 
Superfamily of Bp2_287 
complex unclassified

structured_complex

1 

BSnc115 
Superfamily of BSnc115 
2H

structured_simple

1 

BSnc119 
Superfamily of BSnc119 
2H

structured_simple

1 

BSnc120 
Superfamily of BSnc120 
3H

structured_simple

1 

BSnc121 
Superfamily of BSnc121 
3H

structured_simple

1 

BSnc140 
Superfamily of BSnc140 
3H

structured_simple

1 

BSnc150 
Superfamily of BSnc150 
hairpin

structured_simple

1 

BSR0441 
Superfamily of BSR0441 
complex unclassified

structured_complex

1 

BSR0602 
Superfamily of BSR0602 
complex unclassified

structured_complex

1 

BSR0626 
Superfamily of BSR0626 
3H

structured_simple

1 

BSR0653 
Superfamily of BSR0653 
complex unclassified

structured_complex

1 

BSR0709 
Superfamily of BSR0709 
complex unclassified

structured_complex

1 

BSR0739 
Superfamily of BSR0739 
complex unclassified

structured_complex

1 

BSR1073 
Superfamily of BSR1073 
complex unclassified

structured_complex

1 

BSR1350 
Superfamily of BSR1350 
3WJ

structured_simple

1 

BsrC 
Superfamily of BsrC 
hairpin

structured_simple

1 

BsrF 
Superfamily of BsrF 
3WJ

structured_simple

1 

BsrG 
Superfamily of BsrG 
complex unclassified

structured_complex

1 

BTE 
Superfamily of BTE 
4WJ

structured_simple

1 

BTH_s1 
Superfamily of BTH_s1 
complex unclassified

structured_complex

1 

BTH_s19 
Superfamily of BTH_s19 
3WJ

structured_simple

1 

BTH_s39 
Superfamily of BTH_s39 
4WJ

structured_simple

1 

bxd_1 
Superfamily of bxd_1 
3WJ

structured_simple

1 

bxd_2 
Superfamily of bxd_2 
3H

structured_simple

1 

bxd_3 
Superfamily of bxd_3 
2H

structured_simple

1 

bxd_4 
Superfamily of bxd_4 
3WJ

structured_simple

1 

bxd_5 
Superfamily of bxd_5 
2H

structured_simple

1 

bxd_6 
Superfamily of bxd_6 
2H

structured_simple

1 

bxd_7 
Superfamily of bxd_7 
hairpin

structured_simple

1 

BYDV_5_UTR 
Superfamily of BYDV_5_UTR 
4H

structured_simple

1 

C0299 
Superfamily of C0299 
2H

structured_simple

1 

C0465 
Superfamily of C0465 
3H

structured_simple

1 

C0719 
Superfamily of C0719 
complex unclassified

structured_complex

1 

C1_109596F_thermometer 
Superfamily of C1_109596F_thermometer 
complex unclassified

structured_complex

1 

C4 
Superfamily of C4 
3WJ

structured_simple

1 

CAESAR 
Superfamily of CAESAR 
3WJ

structured_simple

1 

Cardiovirus_CRE 
Superfamily of Cardiovirus_CRE 
hairpin

structured_simple

1 

CbSR1 
Superfamily of CbSR1 
complex unclassified

structured_complex

1 

CbSR12 
Superfamily of CbSR12 
complex unclassified

structured_complex

1 

CbSR14 
Superfamily of CbSR14 
3WJ

structured_simple

1 

CbSR2 
Superfamily of CbSR2 
complex unclassified

structured_complex

1 

CbSR3 
Superfamily of CbSR3 
complex unclassified

structured_complex

1 

CbSR4 
Superfamily of CbSR4 
complex unclassified

structured_complex

1 

CbSR9 
Superfamily of CbSR9 
complex unclassified

structured_complex

1 

CC0196 
Superfamily of CC0196 
hairpin

structured_simple

1 

CC0734 
Superfamily of CC0734 
2H

structured_simple

1 

CC1840 
Superfamily of CC1840 
2H

structured_simple

1 

CC2171 
Superfamily of CC2171 
complex unclassified

structured_complex

1 

CC3513 
Superfamily of CC3513 
3WJ

structured_simple

1 

CC3552 
Superfamily of CC3552 
3WJ

structured_simple

1 

CC3664 
Superfamily of CC3664 
3H

structured_simple

1 

C/Dbox 
Superfamily of C/Dbox 
hairpin

structured_simple

474 

cdiGMPI 
Superfamily of cdiGMPI 
2H

structured_simple

1 

cdiGMPII 
Superfamily of cdiGMPII 
complex unclassified

structured_complex

1 

CDKN2BAS 
Superfamily of CDKN2BAS 
complex unclassified

structured_complex

1 

CDKN2BAS_2 
Superfamily of CDKN2BAS_2 
2H

structured_simple

1 

CDKN2BAS_3 
Superfamily of CDKN2BAS_3 
3H

structured_simple

1 

ceN115 
Superfamily of ceN115 
3WJ

structured_simple

1 

ceN231 
Superfamily of ceN231 
hairpin

structured_simple

1 

ceN56 
Superfamily of ceN56 
3WJ

structured_simple

1 

ceN723_ceN742 
Superfamily of ceN723_ceN742 
4WJ

structured_simple

1 

ceN93 
Superfamily of ceN93 
2H

structured_simple

1 

Cgb105 
Superfamily of Cgb105 
4WJ

structured_simple

1 

Chlorobi1 
Superfamily of Chlorobi1 
2H

structured_simple

1 

ChlorobiRRM 
Superfamily of ChlorobiRRM 
2H

structured_simple

1 

Chloroflexi1 
Superfamily of Chloroflexi1 
2H

structured_simple

1 

cHP 
Superfamily of cHP 
hairpin

structured_simple

1 

cionamir92 
Superfamily of cionamir92 
hairpin

structured_simple

1 

Cis2_sRNA 
Superfamily of Cis2_sRNA 
complex unclassified

structured_complex

1 

Cis52_sRNA 
Superfamily of Cis52_sRNA 
3WJ

structured_simple

1 

Cis8_sRNA 
Superfamily of Cis8_sRNA 
2H

structured_simple

1 

Cis90_sRNA 
Superfamily of Cis90_sRNA 
complex unclassified

structured_complex

1 

class_I_RNA 
Superfamily of class_I_RNA 
hairpin

structured_simple

1 

Clostridiales1 
Superfamily of Clostridiales1 
4WJ

structured_simple

1 

ClpQY_promoter 
Superfamily of ClpQY_promoter 
hairpin

structured_simple

1 

CLRN1AS1 
Superfamily of CLRN1AS1 
3H

structured_simple

1 

CncR1 
Superfamily of CncR1 
complex unclassified

structured_complex

1 

CnfY_thermometer 
Superfamily of CnfY_thermometer 
hairpin

structured_simple

1 

Cobalamin 
Superfamily of Cobalamin 
4WJ

structured_simple

3 

Collinsella1 
Superfamily of Collinsella1 
4H

structured_simple

1 

CopA 
Superfamily of CopA 
2H

structured_simple

1 

Corona_FSE 
Superfamily of Corona_FSE 
pseudoknot_simple

structured_simple

1 

Corona_package 
Superfamily of Corona_package 
hairpin

structured_simple

1 

Corona_pk3 
Superfamily of Corona_pk3 
pseudoknot_simple

structured_simple

1 

Corona_SLIII 
Superfamily of Corona_SLIII 
hairpin

structured_simple

1 

CoTC_ribozyme 
Superfamily of CoTC_ribozyme 
complex unclassified

structured_complex

1 

CPEB3_ribozyme 
Superfamily of CPEB3_ribozyme 
complex unclassified

structured_complex

1 

CpoB_ybgF_thermometer 
Superfamily of CpoB_ybgF_thermometer 
2H

structured_simple

1 

crcB 
Superfamily of crcB 
hairpin

structured_simple

1 

CrcZ 
Superfamily of CrcZ 
complex unclassified

structured_complex

1 

CrfA 
Superfamily of CrfA 
complex unclassified

structured_complex

1 

CRISPR 
Superfamily of CRISPR 
hairpin

structured_simple

54 

CRISPRDR 
Superfamily of CRISPRDR 
hairpin

structured_simple

64 

cspA 
Superfamily of cspA 
complex unclassified

structured_complex

1 

csRNA 
Superfamily of csRNA 
2H

structured_simple

1 

Csr_Rsm_clan 
Families that are bound by multiple regulatory proteins called CsrA or RsmA. 
complex unclassified

structured_complex

7 

ctRNA_p42d 
Superfamily of ctRNA_p42d 
hairpin

structured_simple

1 

ctRNA_pGA1 
Superfamily of ctRNA_pGA1 
2H

structured_simple

1 

ctRNA_pND324 
Superfamily of ctRNA_pND324 
2H

structured_simple

1 

ctRNA_pT181 
Superfamily of ctRNA_pT181 
2H

structured_simple

1 

CTV_rep_sig 
Superfamily of CTV_rep_sig 
complex unclassified

structured_complex

1 

Cyano1 
Superfamily of Cyano1 
hairpin

structured_simple

1 

Cyano2 
Superfamily of Cyano2 
3H

structured_simple

1 

cyano_het_sRNA 
Superfamily of cyano_het_sRNA 
2H

structured_simple

1 

CyaR_RyeE 
Superfamily of CyaR_RyeE 
2H

structured_simple

1 

DAOAAS1_1 
Superfamily of DAOAAS1_1 
3H

structured_simple

1 

DAOAAS1_2 
Superfamily of DAOAAS1_2 
complex unclassified

structured_complex

1 

DapZ 
Superfamily of DapZ 
2H

structured_simple

1 

DdR34 
Superfamily of DdR34 
3WJ

structured_simple

1 

Deinococcus_Y_RNA 
Superfamily of Deinococcus_Y_RNA 
3WJ

structured_simple

1 

DENV_SLA 
Superfamily of DENV_SLA 
3WJ

structured_simple

1 

DGCR5 
Superfamily of DGCR5 
hairpin

structured_simple

1 

Diantho_3_UTR 
Superfamily of Diantho_3_UTR 
4H

structured_simple

1 

DicF 
Superfamily of DicF 
hairpin

structured_simple

1 

Dictyoglomi1 
Superfamily of Dictyoglomi1 
3WJ

structured_simple

1 

DISC2 
Superfamily of DISC2 
2H

structured_simple

1 

DLEU1_1 
Superfamily of DLEU1_1 
complex unclassified

structured_complex

1 

DLEU1_2 
Superfamily of DLEU1_2 
complex unclassified

structured_complex

1 

DLEU2_1 
Superfamily of DLEU2_1 
2H

structured_simple

1 

DLEU2_2 
Superfamily of DLEU2_2 
2H

structured_simple

1 

DLEU2_3 
Superfamily of DLEU2_3 
hairpin

structured_simple

1 

DLEU2_4 
Superfamily of DLEU2_4 
2H

structured_simple

1 

DLEU2_5 
Superfamily of DLEU2_5 
hairpin

structured_simple

1 

DLEU2_6 
Superfamily of DLEU2_6 
4H

structured_simple

1 

DLG2AS1_1 
Superfamily of DLG2AS1_1 
4H

structured_simple

1 

DLG2AS1_2 
Superfamily of DLG2AS1_2 
multiple_domains

structured_complex

1 

DLX6AS1_1 
Superfamily of DLX6AS1_1 
hairpin

structured_simple

1 

DLX6AS1_2 
Superfamily of DLX6AS1_2 
3WJ

structured_simple

1 

DM_SisR1 
Superfamily of DM_SisR1 
complex unclassified

structured_complex

1 

DnaX 
Superfamily of DnaX 
hairpin

structured_simple

1 

Downstreampeptide 
Superfamily of Downstreampeptide 
complex unclassified

structured_complex

1 

DPB 
Superfamily of DPB 
hairpin

structured_simple

1 

drzagam1 
Superfamily of drzagam1 
3WJ

structured_simple

1 

drzagam22 
Superfamily of drzagam22 
complex unclassified

structured_complex

1 

DsrA 
Superfamily of DsrA 
3H

structured_simple

1 

EAV_LTH 
Superfamily of EAV_LTH 
hairpin

structured_simple

1 

EBER1 
Superfamily of EBER1 
complex unclassified

structured_complex

1 

EBER2 
Superfamily of EBER2 
3WJ

structured_simple

1 

EBvsisRNA1 
Superfamily of EBvsisRNA1 
2H

structured_simple

1 

EBvsisRNA2 
Superfamily of EBvsisRNA2 
hairpin

structured_simple

1 

eeev_FSE 
Superfamily of eeev_FSE 
hairpin

structured_simple

1 

EF0408_EF0409 
Superfamily of EF0408_EF0409 
complex unclassified

structured_complex

1 

EF0605_EF0606 
Superfamily of EF0605_EF0606 
3H

structured_simple

1 

EF0820_EF0821 
Superfamily of EF0820_EF0821 
complex unclassified

structured_complex

1 

EF0869_EF0870 
Superfamily of EF0869_EF0870 
complex unclassified

structured_complex

1 

EF1368_EF1369 
Superfamily of EF1368_EF1369 
complex unclassified

structured_complex

1 

EF3314_EF3315 
Superfamily of EF3314_EF3315 
4H

structured_simple

1 

eiav_FSE 
Superfamily of eiav_FSE 
hairpin

structured_simple

1 

enod40 
Superfamily of enod40 
3H

structured_simple

1 

Entero_5_CRE 
Superfamily of Entero_5_CRE 
4WJ

structured_simple

1 

Entero_CRE 
Superfamily of Entero_CRE 
hairpin

structured_simple

1 

Entero_OriR 
Superfamily of Entero_OriR 
complex unclassified

structured_complex

1 

epsC 
Superfamily of epsC 
complex unclassified

structured_complex

1 

Erse 
Superfamily of Erse 
complex unclassified

structured_complex

1 

ES003 
Superfamily of ES003 
2H

structured_simple

1 

ES036 
Superfamily of ES036 
hairpin

structured_simple

1 

ES056 
Superfamily of ES056 
2H

structured_simple

1 

ES173 
Superfamily of ES173 
hairpin

structured_simple

1 

ES205 
Superfamily of ES205 
hairpin

structured_simple

1 

ES222 
Superfamily of ES222 
2H

structured_simple

1 

ES239 
Superfamily of ES239 
3H

structured_simple

1 

Esr41 
Superfamily of Esr41 
3H

structured_simple

1 

Evf2_5p 
Superfamily of Evf2_5p 
3H

structured_simple

1 

F6 
Superfamily of F6 
hairpin

structured_simple

1 

FAM13AAS1_1 
Superfamily of FAM13AAS1_1 
4H

structured_simple

1 

FAM13AAS1_2 
Superfamily of FAM13AAS1_2 
3WJ

structured_simple

1 

FASAS1 
Superfamily of FASAS1 
multiple_domains

structured_complex

1 

FasX 
Superfamily of FasX 
3H

structured_simple

1 

FdoG1_thermometer 
Superfamily of FdoG1_thermometer 
complex unclassified

structured_complex

1 

ffh 
Superfamily of ffh 
hairpin

structured_simple

1 

FIE3 
Superfamily of FIE3 
hairpin

structured_simple

1 

FinPtraJ 
Superfamily of FinPtraJ 
2H

structured_simple

2 

fiv_FSE 
Superfamily of fiv_FSE 
pseudoknot_simple

structured_simple

1 

Flavi_CRE 
Superfamily of Flavi_CRE 
2H

structured_simple

1 

flavi_FSE 
Superfamily of flavi_FSE 
pseudoknot_simple

structured_simple

1 

Flavivirus_DB 
Superfamily of Flavivirus_DB 
3WJ

structured_simple

1 

Flavivirus_SLIV 
Superfamily of Flavivirus_SLIV 
3WJ

structured_simple

1 

Flavo1 
Superfamily of Flavo1 
hairpin

structured_simple

1 

flgRhizobiales 
Superfamily of flgRhizobiales 
3H

structured_simple

1 

flpD 
Superfamily of flpD 
hairpin

structured_simple

1 

FMN 
Superfamily of FMN 
complex unclassified

structured_complex

1 

FMR1AS1_1 
Superfamily of FMR1AS1_1 
hairpin

structured_simple

1 

FMR1AS1_2 
Superfamily of FMR1AS1_2 
hairpin

structured_simple

1 

FourU 
Superfamily of FourU 
2H

structured_simple

1 

frnS 
Superfamily of frnS 
3H

structured_simple

1 

FsrA 
Superfamily of FsrA 
2H

structured_simple

1 

fstAT 
Superfamily of fstAT 
3WJ

structured_simple

1 

FtrA 
Superfamily of FtrA 
3H

structured_simple

1 

FtrB 
Superfamily of FtrB 
3H

structured_simple

1 

FTX_1 
Superfamily of FTX_1 
2H

structured_simple

1 

FTX_2 
Superfamily of FTX_2 
2H

structured_simple

1 

FTX_3 
Superfamily of FTX_3 
3WJ

structured_simple

1 

FTX_4 
Superfamily of FTX_4 
4WJ

structured_simple

1 

FTX_5 
Superfamily of FTX_5 
complex unclassified

structured_complex

1 

Fwd6_3p_UTR 
Superfamily of Fwd6_3p_UTR 
4H

structured_simple

1 

g2 
Superfamily of g2 
hairpin

structured_simple

1 

GABA3 
Superfamily of GABA3 
hairpin

structured_simple

1 

gabT 
Superfamily of gabT 
hairpin

structured_simple

1 

gadd7 
Superfamily of gadd7 
complex unclassified

structured_complex

1 

GadY 
Superfamily of GadY 
3H

structured_simple

1 

GAIT 
Superfamily of GAIT 
hairpin

structured_simple

1 

Gammaretro_CES 
Superfamily of Gammaretro_CES 
3H

structured_simple

1 

GCSF_SLDE 
Superfamily of GCSF_SLDE 
3H

structured_simple

1 

GcvB 
Superfamily of GcvB 
complex unclassified

structured_complex

1 

GHRLOS 
Superfamily of GHRLOS 
3H

structured_simple

1 

GIR1 
Superfamily of GIR1 
complex unclassified

structured_complex

1 

Glm 
Superfamily of Glm 
3WJ

structured_simple

2 

glmS 
Superfamily of glmS 
4H

structured_simple

1 

glnA 
Superfamily of glnA 
3WJ

structured_simple

1 

Gl_RNase_MRP 
Superfamily of Gl_RNase_MRP 
3H

structured_simple

1 

GlsR16_miR3 
Superfamily of GlsR16_miR3 
hairpin

structured_simple

1 

GlsR17_miR2 
Superfamily of GlsR17_miR2 
hairpin

structured_simple

1 

GlsR1_miR6 
Superfamily of GlsR1_miR6 
hairpin

structured_simple

1 

GlsR2_miR4 
Superfamily of GlsR2_miR4 
hairpin

structured_simple

1 

GlsR8_miR10 
Superfamily of GlsR8_miR10 
hairpin

structured_simple

1 

Glycine 
Superfamily of Glycine 
3WJ

structured_simple

1 

GmglnB1_5p_UTR 
Superfamily of GmglnB1_5p_UTR 
2H

structured_simple

1 

GNASAS1_1 
Superfamily of GNASAS1_1 
2H

structured_simple

1 

GNASAS1_2 
Superfamily of GNASAS1_2 
2H

structured_simple

1 

GNASAS1_3 
Superfamily of GNASAS1_3 
hairpin

structured_simple

1 

GNASAS1_4 
Superfamily of GNASAS1_4 
complex unclassified

structured_complex

1 

GNASAS1_5 
Superfamily of GNASAS1_5 
hairpin

structured_simple

1 

GOLLD 
Superfamily of GOLLD 
complex unclassified

structured_complex

1 

GP_knot1 
Superfamily of GP_knot1 
pseudoknot_simple

structured_simple

1 

GP_knot2 
Superfamily of GP_knot2 
pseudoknot_simple

structured_simple

1 

greA 
Superfamily of greA 
4H

structured_simple

1 

GRIK4_3p_UTR 
Superfamily of GRIK4_3p_UTR 
hairpin

structured_simple

1 

Gurken 
Superfamily of Gurken 
hairpin

structured_simple

1 

Gut1 
Superfamily of Gut1 
3H

structured_simple

1 

gyrA 
Superfamily of gyrA 
2H

structured_simple

1 

H19_1 
Superfamily of H19_1 
hairpin

structured_simple

1 

H19_2 
Superfamily of H19_2 
hairpin

structured_simple

1 

H19_3 
Superfamily of H19_3 
2H

structured_simple

1 

h2cR 
Superfamily of h2cR 
hairpin

structured_simple

1 

H/ACAbox 
Superfamily of H/ACAbox 
2H

structured_simple

294 

Hairpin ribozyme 
Superfamily of Hairpin ribozyme 
hairpin

structured_simple

1 

Hammerhead 
Superfamily of Hammerhead 
3WJ

structured_simple

5 

HAR1A 
Superfamily of HAR1A 
3WJ

structured_simple

1 

Hatchet 
Superfamily of Hatchet 
2H

structured_simple

1 

HAV_CRE 
Superfamily of HAV_CRE 
hairpin

structured_simple

1 

HCV_ARF_SL 
Superfamily of HCV_ARF_SL 
2H

structured_simple

1 

HCV_package 
Superfamily of HCV_package 
hairpin

structured_simple

1 

HCV_packageSL4629 
Superfamily of HCV_packageSL4629 
hairpin

structured_simple

1 

HCV_packageSL6067 
Superfamily of HCV_packageSL6067 
hairpin

structured_simple

1 

HCV_packageSL733 
Superfamily of HCV_packageSL733 
hairpin

structured_simple

1 

HCV_SLIV 
Superfamily of HCV_SLIV 
hairpin

structured_simple

1 

HCV_SLVII 
Superfamily of HCV_SLVII 
hairpin

structured_simple

1 

HCV_X2 
Superfamily of HCV_X2 
3H

structured_simple

1 

HDVFprausnitzii 
Superfamily of HDVFprausnitzii 
2H

structured_simple

1 

HDV_ribozyme 
Superfamily of HDV_ribozyme 
complex unclassified

structured_complex

1 

HEARO 
Superfamily of HEARO 
complex unclassified

structured_complex

1 

Hepadnavirus_epsilon 
Superfamily of Hepadnavirus_epsilon 
hairpin

structured_simple

2 

HepC_CRE 
Superfamily of HepC_CRE 
hairpin

structured_simple

1 

HepE_CRE 
Superfamily of HepE_CRE 
2H

structured_simple

1 

HgcC 
Superfamily of HgcC 
4WJ

structured_simple

1 

HgcE 
Superfamily of HgcE 
hairpin

structured_simple

1 

HgcF 
Superfamily of HgcF 
3H

structured_simple

1 

HgcG 
Superfamily of HgcG 
3WJ

structured_simple

1 

hilD_3p_UTR 
Superfamily of hilD_3p_UTR 
complex unclassified

structured_complex

1 

His_leader 
Superfamily of His_leader 
3H

structured_simple

1 

Histone3 
Superfamily of Histone3 
3WJ

structured_simple

1 

HIV1_DIS 
Superfamily of HIV1_DIS 
hairpin

structured_simple

1 

HIV1_SD 
Superfamily of HIV1_SD 
hairpin

structured_simple

1 

HIV1_SL3 
Superfamily of HIV1_SL3 
hairpin

structured_simple

1 

HIV1_SL4 
Superfamily of HIV1_SL4 
hairpin

structured_simple

1 

HIV_FE 
Superfamily of HIV_FE 
hairpin

structured_simple

1 

HIV_FS2 
Superfamily of HIV_FS2 
hairpin

structured_simple

1 

HIV_GSL3 
Superfamily of HIV_GSL3 
hairpin

structured_simple

1 

HIV_PBS 
Superfamily of HIV_PBS 
3WJ

structured_simple

1 

HIV_POL1_SL 
Superfamily of HIV_POL1_SL 
3WJ

structured_simple

1 

HLE 
Superfamily of HLE 
2H

structured_simple

1 

hopC 
Superfamily of hopC 
hairpin

structured_simple

1 

HOTAIR_1 
Superfamily of HOTAIR_1 
hairpin

structured_simple

1 

HOTAIR_2 
Superfamily of HOTAIR_2 
2H

structured_simple

1 

HOTAIR_3 
Superfamily of HOTAIR_3 
hairpin

structured_simple

1 

HOTAIRM1_1 
Superfamily of HOTAIRM1_1 
multiple_domains

structured_complex

1 

HOTAIRM1_2 
Superfamily of HOTAIRM1_2 
multiple_domains

structured_complex

1 

HOTAIRM1_3 
Superfamily of HOTAIRM1_3 
hairpin

structured_simple

1 

HOTAIRM1_4 
Superfamily of HOTAIRM1_4 
3WJ

structured_simple

1 

HOTAIRM1_5 
Superfamily of HOTAIRM1_5 
3WJ

structured_simple

1 

HOTTIP_1 
Superfamily of HOTTIP_1 
hairpin

structured_simple

1 

HOTTIP_2 
Superfamily of HOTTIP_2 
multiple_domains

structured_complex

1 

HOTTIP_3 
Superfamily of HOTTIP_3 
complex unclassified

structured_complex

1 

HOTTIP_4 
Superfamily of HOTTIP_4 
multiple_domains

structured_complex

1 

HOXA11AS1_1 
Superfamily of HOXA11AS1_1 
3H

structured_simple

1 

HOXA11AS1_2 
Superfamily of HOXA11AS1_2 
complex unclassified

structured_complex

1 

HOXA11AS1_3 
Superfamily of HOXA11AS1_3 
4WJ

structured_simple

1 

HOXA11AS1_4 
Superfamily of HOXA11AS1_4 
complex unclassified

structured_complex

1 

HOXA11AS1_5 
Superfamily of HOXA11AS1_5 
multiple_domains

structured_complex

1 

HOXA11AS1_6 
Superfamily of HOXA11AS1_6 
complex unclassified

structured_complex

1 

HOXB13AS1_1 
Superfamily of HOXB13AS1_1 
4H

structured_simple

1 

HOXB13AS1_2 
Superfamily of HOXB13AS1_2 
3WJ

structured_simple

1 

HPnc0260 
Superfamily of HPnc0260 
3H

structured_simple

1 

HPnc0580 
Superfamily of HPnc0580 
3H

structured_simple

1 

HrrF 
Superfamily of HrrF 
3H

structured_simple

1 

Hrs1 
Superfamily of Hrs1 
2H

structured_simple

1 

Hrs10 
Superfamily of Hrs10 
3H

structured_simple

1 

Hrs12 
Superfamily of Hrs12 
3H

structured_simple

1 

Hrs13 
Superfamily of Hrs13 
3H

structured_simple

1 

Hrs21 
Superfamily of Hrs21 
4WJ

structured_simple

1 

hsp17 
Superfamily of hsp17 
hairpin

structured_simple

1 

Hsp83_3_UTR 
Superfamily of Hsp83_3_UTR 
complex unclassified

structured_complex

1 

Hsp90_CRE 
Superfamily of Hsp90_CRE 
3WJ

structured_simple

1 

HSRomega_1 
Superfamily of HSRomega_1 
hairpin

structured_simple

1 

HSRomega_2 
Superfamily of HSRomega_2 
hairpin

structured_simple

1 

HSUR 
Superfamily of HSUR 
2H

structured_simple

1 

htlv_FSE 
Superfamily of htlv_FSE 
hairpin

structured_simple

1 

HtrA_thermometer 
Superfamily of HtrA_thermometer 
hairpin

structured_simple

1 

HTTAS1_1 
Superfamily of HTTAS1_1 
multiple_domains

structured_complex

1 

HTTAS1_2 
Superfamily of HTTAS1_2 
3WJ

structured_simple

1 

HTTAS1_3 
Superfamily of HTTAS1_3 
3WJ

structured_simple

1 

HULC 
Superfamily of HULC 
2H

structured_simple

1 

hvtmirH 
Superfamily of hvtmirH 
hairpin

structured_simple

1 

HYMAI 
Superfamily of HYMAI 
complex unclassified

structured_complex

1 

IBV_DRNA 
Superfamily of IBV_DRNA 
hairpin

structured_simple

1 

icaR_3p_UTR 
Superfamily of icaR_3p_UTR 
complex unclassified

structured_complex

1 

icaR_5p_UTR 
Superfamily of icaR_5p_UTR 
hairpin

structured_simple

1 

IFN_gamma 
Superfamily of IFN_gamma 
complex unclassified

structured_complex

1 

IhtA 
Superfamily of IhtA 
3H

structured_simple

1 

IMES1 
Superfamily of IMES1 
complex unclassified

structured_complex

1 

IMES2 
Superfamily of IMES2 
4H

structured_simple

1 

IMES3 
Superfamily of IMES3 
2H

structured_simple

1 

IMES4 
Superfamily of IMES4 
3H

structured_simple

1 

Intron_gpI 
Superfamily of Intron_gpI 
Intron_gpIlike

structured_complex

5 

Intron_gpII 
Superfamily of Intron_gpII 
Intron_gpIIlike

structured_complex

5 

InvR 
Superfamily of InvR 
3WJ

structured_simple

1 

IRE_I 
Superfamily of IRE_I 
hairpin

structured_simple

1 

IRE_II 
Superfamily of IRE_II 
hairpin

structured_simple

1 

IRES_APC 
Superfamily of IRES_APC 
hairpin

structured_simple

1 

IRES_Bag1 
Superfamily of IRES_Bag1 
IRES_multi_domain

structured_complex

1 

IRES_Bip 
Superfamily of IRES_Bip 
IRES_multi_domain

structured_complex

1 

IRES_cmyc 
Superfamily of IRES_cmyc 
IRES_multi_domain

structured_complex

1 

IRES_Cripavirus 
Superfamily of IRES_Cripavirus 
IRES_multi_domain

structured_complex

1 

IRES_csis 
Superfamily of IRES_csis 
IRES_multi_domain

structured_complex

1 

IRES_Cx32 
Superfamily of IRES_Cx32 
IRES_multi_domain

structured_complex

1 

IRES_Cx43 
Superfamily of IRES_Cx43 
IRES_multi_domain

structured_complex

1 

IRES_cyp24a1 
Superfamily of IRES_cyp24a1 
IRES_multi_domain

structured_complex

1 

IRES_EBNA 
Superfamily of IRES_EBNA 
IRES_multi_domain

structured_complex

1 

IRES_FGF1 
Superfamily of IRES_FGF1 
IRES_multi_domain

structured_complex

1 

IRES_FGF2 
Superfamily of IRES_FGF2 
IRES_multi_domain

structured_complex

1 

IRES_HCV 
Superfamily of IRES_HCV 
IRES_multi_domain

structured_complex

1 

IRES_HepA 
Superfamily of IRES_HepA 
IRES_multi_domain

structured_complex

1 

IRES_HIF1 
Superfamily of IRES_HIF1 
IRES_multi_domain

structured_complex

1 

IRES_Hsp70 
Superfamily of IRES_Hsp70 
IRES_multi_domain

structured_complex

1 

IRES_IGF2 
Superfamily of IRES_IGF2 
IRES_multi_domain

structured_complex

1 

IRES_KSHV 
Superfamily of IRES_KSHV 
IRES_multi_domain

structured_complex

1 

IRES_Kv1_4 
Superfamily of IRES_Kv1_4 
IRES_multi_domain

structured_complex

1 

IRES_Lmyc 
Superfamily of IRES_Lmyc 
IRES_multi_domain

structured_complex

1 

IRES_mnt 
Superfamily of IRES_mnt 
IRES_multi_domain

structured_complex

1 

IRES_nmyc 
Superfamily of IRES_nmyc 
IRES_multi_domain

structured_complex

1 

IRES_Pesti 
Superfamily of IRES_Pesti 
IRES_multi_domain

structured_complex

1 

IRES_Picorna 
Superfamily of IRES_Picorna 
IRES_multi_domain

structured_complex

1 

IRES_Picorna_2 
Superfamily of IRES_Picorna_2 
IRES_multi_domain

structured_complex

1 

IRES_RhPV 
Superfamily of IRES_RhPV 
IRES_multi_domain

structured_complex

1 

IRES_Tobamo 
Superfamily of IRES_Tobamo 
IRES_multi_domain

structured_complex

1 

IRES_TrkB 
Superfamily of IRES_TrkB 
IRES_multi_domain

structured_complex

1 

IRES_VEGF_A 
Superfamily of IRES_VEGF_A 
IRES_multi_domain

structured_complex

1 

IS009 
Superfamily of IS009 
3WJ

structured_simple

1 

IS061 
Superfamily of IS061 
complex unclassified

structured_complex

1 

IS102 
Superfamily of IS102 
4H

structured_simple

1 

IS1222_FSE 
Superfamily of IS1222_FSE 
3WJ

structured_simple

1 

IS128 
Superfamily of IS128 
complex unclassified

structured_complex

1 

iscRS 
Superfamily of iscRS 
complex unclassified

structured_complex

1 

IscS1_thermometer 
Superfamily of IscS1_thermometer 
4WJ

structured_simple

1 

isrA 
Superfamily of isrA 
2H

structured_simple

1 

isrB 
Superfamily of isrB 
3H

structured_simple

1 

isrC 
Superfamily of isrC 
4WJ

structured_simple

1 

isrD 
Superfamily of isrD 
2H

structured_simple

1 

isrF 
Superfamily of isrF 
complex unclassified

structured_complex

1 

isrG 
Superfamily of isrG 
complex unclassified

structured_complex

1 

isrH 
Superfamily of isrH 
complex unclassified

structured_complex

1 

isrI 
Superfamily of isrI 
2H

structured_simple

1 

isrJ 
Superfamily of isrJ 
2H

structured_simple

1 

isrK 
Superfamily of isrK 
3H

structured_simple

1 

isrL 
Superfamily of isrL 
complex unclassified

structured_complex

1 

IsrM 
Superfamily of IsrM 
complex unclassified

structured_complex

1 

isrN 
Superfamily of isrN 
3WJ

structured_simple

1 

isrO 
Superfamily of isrO 
3WJ

structured_simple

1 

isrP 
Superfamily of isrP 
3WJ

structured_simple

1 

isrQ 
Superfamily of isrQ 
complex unclassified

structured_complex

1 

IsrR 
Superfamily of IsrR 
hairpin

structured_simple

1 

istR 
Superfamily of istR 
3H

structured_simple

1 

JA01 
Superfamily of JA01 
4WJ

structured_simple

1 

JA02 
Superfamily of JA02 
3H

structured_simple

1 

JA03 
Superfamily of JA03 
complex unclassified

structured_complex

1 

JA04 
Superfamily of JA04 
2H

structured_simple

1 

JEV_hairpin 
Superfamily of JEV_hairpin 
hairpin

structured_simple

1 

JPX_1 
Superfamily of JPX_1 
multiple_domains

structured_complex

1 

JPX_2 
Superfamily of JPX_2 
2H

structured_simple

1 

JUMPstart 
Superfamily of JUMPstart 
hairpin

structured_simple

1 

K10_TLS 
Superfamily of K10_TLS 
hairpin

structured_simple

1 

KatA_thermometer 
Superfamily of KatA_thermometer 
4H

structured_simple

1 

K_chan_RES 
Superfamily of K_chan_RES 
hairpin

structured_simple

1 

KCNQ1OT1_1 
Superfamily of KCNQ1OT1_1 
hairpin

structured_simple

1 

KCNQ1OT1_2 
Superfamily of KCNQ1OT1_2 
complex unclassified

structured_complex

1 

KCNQ1OT1_3 
Superfamily of KCNQ1OT1_3 
hairpin

structured_simple

1 

KCNQ1OT1_5 
Superfamily of KCNQ1OT1_5 
2H

structured_simple

1 

KRAS_3UTR 
Superfamily of KRAS_3UTR 
hairpin

structured_simple

1 

L10_leader 
Superfamily of L10_leader 
2H

structured_simple

1 

L13_leader 
Superfamily of L13_leader 
hairpin

structured_simple

1 

L17DE 
Superfamily of L17DE 
2H

structured_simple

1 

L19_leader 
Superfamily of L19_leader 
hairpin

structured_simple

1 

L20_leader 
Superfamily of L20_leader 
3H

structured_simple

1 

L21_leader 
Superfamily of L21_leader 
hairpin

structured_simple

1 

lactisplasmid 
Superfamily of lactisplasmid 
2H

structured_simple

1 

LactorpoB 
Superfamily of LactorpoB 
hairpin

structured_simple

1 

Lactousp 
Superfamily of Lactousp 
hairpin

structured_simple

1 

Lambda_thermo 
Superfamily of Lambda_thermo 
hairpin

structured_simple

1 

LasI_thermometer 
Superfamily of LasI_thermometer 
3H

structured_simple

1 

LcrF_thermometer 
Superfamily of LcrF_thermometer 
3WJ

structured_simple

1 

LDH1_5p_UTR 
Superfamily of LDH1_5p_UTR 
3WJ

structured_simple

1 

let7 
Superfamily of let7 
hairpin

structured_simple

1 

Leu_leader 
Superfamily of Leu_leader 
2H

structured_simple

1 

leuphe_leader 
Superfamily of leuphe_leader 
3WJ

structured_simple

1 

LhrA 
Superfamily of LhrA 
4H

structured_simple

1 

LhrC 
Superfamily of LhrC 
2H

structured_simple

1 

lin4 
Superfamily of lin4 
hairpin

structured_simple

1 

LINC00901 
Superfamily of LINC00901 
complex unclassified

structured_complex

1 

lincRNAp21_1 
Superfamily of lincRNAp21_1 
complex unclassified

structured_complex

1 

lincRNAp21_2 
Superfamily of lincRNAp21_2 
hairpin

structured_simple

1 

livK 
Superfamily of livK 
2H

structured_simple

1 

LLnc147 
Superfamily of LLnc147 
4H

structured_simple

1 

Lnt 
Superfamily of Lnt 
hairpin

structured_simple

1 

LSU_rRNA 
Superfamily of LSU_rRNA 
rRNA

structured_complex

5 

lsy6 
Superfamily of lsy6 
hairpin

structured_simple

1 

Lysine 
Superfamily of Lysine 
complex unclassified

structured_complex

1 

MALAT1 
Superfamily of MALAT1 
2H

structured_simple

1 

manA 
Superfamily of manA 
complex unclassified

structured_complex

1 

ManX_thermometer 
Superfamily of ManX_thermometer 
hairpin

structured_simple

1 

MAT2A_A 
Superfamily of MAT2A_A 
hairpin

structured_simple

1 

MAT2A_B 
Superfamily of MAT2A_B 
hairpin

structured_simple

1 

MAT2A_C 
Superfamily of MAT2A_C 
hairpin

structured_simple

1 

MAT2A_D 
Superfamily of MAT2A_D 
hairpin

structured_simple

1 

MAT2A_E 
Superfamily of MAT2A_E 
hairpin

structured_simple

1 

MAT2A_F 
Superfamily of MAT2A_F 
hairpin

structured_simple

1 

Mcr7 
Superfamily of Mcr7 
complex unclassified

structured_complex

1 

MCS4 
Superfamily of MCS4 
3H

structured_simple

1 

MEG3_2 
Superfamily of MEG3_2 
2H

structured_simple

1 

MEG8_1 
Superfamily of MEG8_1 
hairpin

structured_simple

1 

MEG8_2 
Superfamily of MEG8_2 
4WJ

structured_simple

1 

MEG8_3 
Superfamily of MEG8_3 
multiple_domains

structured_complex

1 

MESTIT1_1 
Superfamily of MESTIT1_1 
4H

structured_simple

1 

MESTIT1_2 
Superfamily of MESTIT1_2 
multiple_domains

structured_complex

1 

MESTIT1_3 
Superfamily of MESTIT1_3 
2H

structured_simple

1 

Methylobacterium1 
Superfamily of Methylobacterium1 
3H

structured_simple

1 

MFR 
Superfamily of MFR 
3WJ

structured_simple

1 

Mg_sensor 
Superfamily of Mg_sensor 
3WJ

structured_simple

1 

MIAT_exon1 
Superfamily of MIAT_exon1 
4WJ

structured_simple

1 

MIAT_exon5_1 
Superfamily of MIAT_exon5_1 
2H

structured_simple

1 

MIAT_exon5_2 
Superfamily of MIAT_exon5_2 
2H

structured_simple

1 

MIAT_exon5_3 
Superfamily of MIAT_exon5_3 
complex unclassified

structured_complex

1 

MicA 
Superfamily of MicA 
2H

structured_simple

1 

MicC 
Superfamily of MicC 
3H

structured_simple

1 

MicF 
Superfamily of MicF 
2H

structured_simple

1 

MicL 
Superfamily of MicL 
complex unclassified

structured_complex

1 

Mico1 
Superfamily of Mico1 
complex unclassified

structured_complex

1 

MicX 
Superfamily of MicX 
4H

structured_simple

1 

MIMT1_1 
Superfamily of MIMT1_1 
3WJ

structured_simple

1 

miniykkC 
Superfamily of miniykkC 
2H

structured_simple

1 

mir1 
Superfamily of mir1 
hairpin

structured_simple

1 

mir10 
Superfamily of mir10 
hairpin

structured_simple

1 

mir101 
Superfamily of mir101 
hairpin

structured_simple

1 

mir1017 
Superfamily of mir1017 
hairpin

structured_simple

1 

MIR1027 
Superfamily of MIR1027 
hairpin

structured_simple

1 

mir103 
Superfamily of mir103 
hairpin

structured_simple

1 

mir105 
Superfamily of mir105 
hairpin

structured_simple

1 

MIR1151 
Superfamily of MIR1151 
hairpin

structured_simple

1 

mir1178 
Superfamily of mir1178 
hairpin

structured_simple

1 

mir1180 
Superfamily of mir1180 
hairpin

structured_simple

1 

mir1183 
Superfamily of mir1183 
hairpin

structured_simple

1 

mir12 
Superfamily of mir12 
hairpin

structured_simple

1 

mir1207 
Superfamily of mir1207 
hairpin

structured_simple

1 

mir1208 
Superfamily of mir1208 
hairpin

structured_simple

1 

mir122 
Superfamily of mir122 
hairpin

structured_simple

1 

MIR1222 
Superfamily of MIR1222 
hairpin

structured_simple

1 

MIR1223 
Superfamily of MIR1223 
hairpin

structured_simple

1 

mir1224 
Superfamily of mir1224 
hairpin

structured_simple

1 

mir1225 
Superfamily of mir1225 
hairpin

structured_simple

1 

mir1226 
Superfamily of mir1226 
hairpin

structured_simple

1 

mir1227 
Superfamily of mir1227 
hairpin

structured_simple

1 

mir1237 
Superfamily of mir1237 
hairpin

structured_simple

1 

mir124 
Superfamily of mir124 
hairpin

structured_simple

1 

mir1249 
Superfamily of mir1249 
hairpin

structured_simple

1 

mir1251 
Superfamily of mir1251 
hairpin

structured_simple

1 

mir1253 
Superfamily of mir1253 
hairpin

structured_simple

1 

mir1255 
Superfamily of mir1255 
hairpin

structured_simple

1 

mir126 
Superfamily of mir126 
hairpin

structured_simple

1 

mir1265 
Superfamily of mir1265 
hairpin

structured_simple

1 

mir127 
Superfamily of mir127 
hairpin

structured_simple

1 

mir1275 
Superfamily of mir1275 
hairpin

structured_simple

1 

mir128 
Superfamily of mir128 
hairpin

structured_simple

1 

mir1280 
Superfamily of mir1280 
hairpin

structured_simple

1 

mir1287 
Superfamily of mir1287 
hairpin

structured_simple

1 

mir129 
Superfamily of mir129 
hairpin

structured_simple

1 

mir1296 
Superfamily of mir1296 
hairpin

structured_simple

1 

mir130 
Superfamily of mir130 
hairpin

structured_simple

1 

mir1302 
Superfamily of mir1302 
hairpin

structured_simple

1 

mir1306 
Superfamily of mir1306 
hairpin

structured_simple

1 

mir1307 
Superfamily of mir1307 
hairpin

structured_simple

1 

mir132 
Superfamily of mir132 
hairpin

structured_simple

1 

mir133 
Superfamily of mir133 
hairpin

structured_simple

1 

mir134 
Superfamily of mir134 
hairpin

structured_simple

1 

mir135 
Superfamily of mir135 
hairpin

structured_simple

1 

mir136 
Superfamily of mir136 
hairpin

structured_simple

1 

mir137 
Superfamily of mir137 
hairpin

structured_simple

2 

mir138 
Superfamily of mir138 
hairpin

structured_simple

1 

mir1388 
Superfamily of mir1388 
hairpin

structured_simple

1 

mir139 
Superfamily of mir139 
hairpin

structured_simple

1 

mir14 
Superfamily of mir14 
hairpin

structured_simple

1 

mir140 
Superfamily of mir140 
hairpin

structured_simple

1 

mir1419 
Superfamily of mir1419 
hairpin

structured_simple

1 

mir142 
Superfamily of mir142 
hairpin

structured_simple

1 

MIR1428 
Superfamily of MIR1428 
hairpin

structured_simple

1 

mir143 
Superfamily of mir143 
hairpin

structured_simple

1 

mir144 
Superfamily of mir144 
hairpin

structured_simple

1 

MIR1444 
Superfamily of MIR1444 
hairpin

structured_simple

1 

MIR1446 
Superfamily of MIR1446 
hairpin

structured_simple

1 

mir145 
Superfamily of mir145 
hairpin

structured_simple

1 

mir146 
Superfamily of mir146 
hairpin

structured_simple

1 

mir147 
Superfamily of mir147 
hairpin

structured_simple

1 

mir1473 
Superfamily of mir1473 
hairpin

structured_simple

1 

mir148 
Superfamily of mir148 
hairpin

structured_simple

1 

mir149 
Superfamily of mir149 
hairpin

structured_simple

1 

mir1497 
Superfamily of mir1497 
hairpin

structured_simple

1 

mir15 
Superfamily of mir15 
hairpin

structured_simple

2 

mir150 
Superfamily of mir150 
hairpin

structured_simple

1 

mir153 
Superfamily of mir153 
hairpin

structured_simple

1 

mir154 
Superfamily of mir154 
hairpin

structured_simple

1 

mir155 
Superfamily of mir155 
hairpin

structured_simple

1 

MIR158 
Superfamily of MIR158 
hairpin

structured_simple

1 

MIR159 
Superfamily of MIR159 
hairpin

structured_simple

1 

MIR164 
Superfamily of MIR164 
hairpin

structured_simple

1 

mir166 
Superfamily of mir166 
hairpin

structured_simple

1 

mir1662 
Superfamily of mir1662 
hairpin

structured_simple

1 

MIR167_1 
Superfamily of MIR167_1 
hairpin

structured_simple

1 

mir17 
Superfamily of mir17 
hairpin

structured_simple

1 

mir1803 
Superfamily of mir1803 
hairpin

structured_simple

1 

mir181 
Superfamily of mir181 
hairpin

structured_simple

1 

mir182 
Superfamily of mir182 
hairpin

structured_simple

4 

mir1827 
Superfamily of mir1827 
hairpin

structured_simple

1 

mir1829 
Superfamily of mir1829 
hairpin

structured_simple

1 

mir184 
Superfamily of mir184 
hairpin

structured_simple

1 

MIR1846 
Superfamily of MIR1846 
hairpin

structured_simple

1 

mir185 
Superfamily of mir185 
hairpin

structured_simple

1 

mir186 
Superfamily of mir186 
hairpin

structured_simple

1 

mir187 
Superfamily of mir187 
hairpin

structured_simple

1 

mir188 
Superfamily of mir188 
hairpin

structured_simple

1 

mir19 
Superfamily of mir19 
hairpin

structured_simple

2 

mir191 
Superfamily of mir191 
hairpin

structured_simple

1 

mir1912 
Superfamily of mir1912 
hairpin

structured_simple

1 

mir192 
Superfamily of mir192 
hairpin

structured_simple

1 

mir193 
Superfamily of mir193 
hairpin

structured_simple

1 

mir1937 
Superfamily of mir1937 
hairpin

structured_simple

1 

mir194 
Superfamily of mir194 
hairpin

structured_simple

1 

mir196 
Superfamily of mir196 
hairpin

structured_simple

1 

mir197 
Superfamily of mir197 
hairpin

structured_simple

1 

mir198 
Superfamily of mir198 
hairpin

structured_simple

1 

mir199 
Superfamily of mir199 
hairpin

structured_simple

1 

mir2 
Superfamily of mir2 
hairpin

structured_simple

1 

mir202 
Superfamily of mir202 
hairpin

structured_simple

1 

mir2024 
Superfamily of mir2024 
hairpin

structured_simple

1 

mir203 
Superfamily of mir203 
hairpin

structured_simple

1 

mir204 
Superfamily of mir204 
hairpin

structured_simple

1 

mir205 
Superfamily of mir205 
hairpin

structured_simple

1 

mir207 
Superfamily of mir207 
hairpin

structured_simple

1 

mir208 
Superfamily of mir208 
hairpin

structured_simple

1 

mir21 
Superfamily of mir21 
hairpin

structured_simple

1 

mir210 
Superfamily of mir210 
hairpin

structured_simple

1 

mir213 
Superfamily of mir213 
hairpin

structured_simple

1 

mir216 
Superfamily of mir216 
hairpin

structured_simple

2 

mir217 
Superfamily of mir217 
hairpin

structured_simple

1 

mir218 
Superfamily of mir218 
hairpin

structured_simple

1 

mir219 
Superfamily of mir219 
hairpin

structured_simple

1 

mir22 
Superfamily of mir22 
hairpin

structured_simple

1 

mir221 
Superfamily of mir221 
hairpin

structured_simple

1 

mir223 
Superfamily of mir223 
hairpin

structured_simple

1 

mir2238 
Superfamily of mir2238 
hairpin

structured_simple

1 

mir224 
Superfamily of mir224 
hairpin

structured_simple

1 

mir2241 
Superfamily of mir2241 
hairpin

structured_simple

1 

mir23 
Superfamily of mir23 
hairpin

structured_simple

1 

mir230 
Superfamily of mir230 
hairpin

structured_simple

1 

mir231 
Superfamily of mir231 
hairpin

structured_simple

1 

mir232 
Superfamily of mir232 
hairpin

structured_simple

1 

mir233 
Superfamily of mir233 
hairpin

structured_simple

1 

mir235 
Superfamily of mir235 
hairpin

structured_simple

1 

mir239 
Superfamily of mir239 
hairpin

structured_simple

1 

mir24 
Superfamily of mir24 
hairpin

structured_simple

1 

mir240 
Superfamily of mir240 
hairpin

structured_simple

1 

mir241 
Superfamily of mir241 
hairpin

structured_simple

1 

mir242 
Superfamily of mir242 
hairpin

structured_simple

1 

mir244 
Superfamily of mir244 
hairpin

structured_simple

1 

mir245 
Superfamily of mir245 
hairpin

structured_simple

1 

mir246 
Superfamily of mir246 
hairpin

structured_simple

1 

mir248 
Superfamily of mir248 
hairpin

structured_simple

1 

mir249 
Superfamily of mir249 
hairpin

structured_simple

1 

mir2494 
Superfamily of mir2494 
hairpin

structured_simple

1 

mir25 
Superfamily of mir25 
hairpin

structured_simple

1 

mir250 
Superfamily of mir250 
hairpin

structured_simple

1 

mir251 
Superfamily of mir251 
hairpin

structured_simple

1 

mir2518 
Superfamily of mir2518 
hairpin

structured_simple

1 

mir252 
Superfamily of mir252 
hairpin

structured_simple

1 

mir253 
Superfamily of mir253 
hairpin

structured_simple

1 

mir254 
Superfamily of mir254 
hairpin

structured_simple

1 

mir255 
Superfamily of mir255 
hairpin

structured_simple

1 

MIR2587 
Superfamily of MIR2587 
hairpin

structured_simple

1 

mir259 
Superfamily of mir259 
hairpin

structured_simple

1 

mir26 
Superfamily of mir26 
hairpin

structured_simple

1 

mir268 
Superfamily of mir268 
hairpin

structured_simple

1 

mir27 
Superfamily of mir27 
hairpin

structured_simple

1 

mir275 
Superfamily of mir275 
hairpin

structured_simple

1 

mir276 
Superfamily of mir276 
hairpin

structured_simple

1 

mir2774 
Superfamily of mir2774 
hairpin

structured_simple

1 

mir2778 
Superfamily of mir2778 
hairpin

structured_simple

1 

mir278 
Superfamily of mir278 
hairpin

structured_simple

1 

mir2780 
Superfamily of mir2780 
hairpin

structured_simple

1 

mir279 
Superfamily of mir279 
hairpin

structured_simple

2 

mir280 
Superfamily of mir280 
hairpin

structured_simple

1 

mir2807 
Superfamily of mir2807 
hairpin

structured_simple

1 

mir281 
Superfamily of mir281 
hairpin

structured_simple

1 

mir282 
Superfamily of mir282 
hairpin

structured_simple

1 

mir2833 
Superfamily of mir2833 
hairpin

structured_simple

1 

mir284 
Superfamily of mir284 
hairpin

structured_simple

1 

mir287 
Superfamily of mir287 
hairpin

structured_simple

1 

mir288 
Superfamily of mir288 
hairpin

structured_simple

1 

mir289 
Superfamily of mir289 
hairpin

structured_simple

1 

mir29 
Superfamily of mir29 
hairpin

structured_simple

1 

mir290 
Superfamily of mir290 
hairpin

structured_simple

4 

MIR2907 
Superfamily of MIR2907 
hairpin

structured_simple

1 

mir296 
Superfamily of mir296 
hairpin

structured_simple

1 

mir2968 
Superfamily of mir2968 
hairpin

structured_simple

1 

mir2970 
Superfamily of mir2970 
hairpin

structured_simple

1 

mir2973 
Superfamily of mir2973 
hairpin

structured_simple

1 

mir298 
Superfamily of mir298 
hairpin

structured_simple

1 

mir29852 
Superfamily of mir29852 
hairpin

structured_simple

1 

mir299 
Superfamily of mir299 
hairpin

structured_simple

1 

mir3 
Superfamily of mir3 
hairpin

structured_simple

2 

mir30 
Superfamily of mir30 
hairpin

structured_simple

1 

mir301 
Superfamily of mir301 
hairpin

structured_simple

1 

mir304 
Superfamily of mir304 
hairpin

structured_simple

1 

mir305 
Superfamily of mir305 
hairpin

structured_simple

1 

mir306 
Superfamily of mir306 
hairpin

structured_simple

1 

mir308 
Superfamily of mir308 
hairpin

structured_simple

1 

mir31 
Superfamily of mir31 
hairpin

structured_simple

1 

mir314 
Superfamily of mir314 
hairpin

structured_simple

1 

mir315 
Superfamily of mir315 
hairpin

structured_simple

1 

mir316 
Superfamily of mir316 
hairpin

structured_simple

1 

mir317 
Superfamily of mir317 
hairpin

structured_simple

1 

mir3179 
Superfamily of mir3179 
hairpin

structured_simple

1 

mir3180 
Superfamily of mir3180 
hairpin

structured_simple

1 

mir32 
Superfamily of mir32 
hairpin

structured_simple

1 

mir320 
Superfamily of mir320 
hairpin

structured_simple

1 

mir322 
Superfamily of mir322 
hairpin

structured_simple

1 

mir326 
Superfamily of mir326 
hairpin

structured_simple

1 

mir327 
Superfamily of mir327 
hairpin

structured_simple

1 

mir328 
Superfamily of mir328 
hairpin

structured_simple

1 

mir33 
Superfamily of mir33 
hairpin

structured_simple

1 

mir330 
Superfamily of mir330 
hairpin

structured_simple

1 

mir331 
Superfamily of mir331 
hairpin

structured_simple

1 

mir335 
Superfamily of mir335 
hairpin

structured_simple

1 

mir337 
Superfamily of mir337 
hairpin

structured_simple

1 

mir338 
Superfamily of mir338 
hairpin

structured_simple

1 

mir339 
Superfamily of mir339 
hairpin

structured_simple

1 

mir34 
Superfamily of mir34 
hairpin

structured_simple

2 

mir340 
Superfamily of mir340 
hairpin

structured_simple

1 

mir342 
Superfamily of mir342 
hairpin

structured_simple

1 

mir344 
Superfamily of mir344 
hairpin

structured_simple

1 

mir345 
Superfamily of mir345 
hairpin

structured_simple

1 

mir346 
Superfamily of mir346 
hairpin

structured_simple

1 

mir350 
Superfamily of mir350 
hairpin

structured_simple

1 

mir351 
Superfamily of mir351 
hairpin

structured_simple

1 

mir353 
Superfamily of mir353 
hairpin

structured_simple

1 

mir354 
Superfamily of mir354 
hairpin

structured_simple

1 

mir355 
Superfamily of mir355 
hairpin

structured_simple

1 

mir357 
Superfamily of mir357 
hairpin

structured_simple

1 

mir358 
Superfamily of mir358 
hairpin

structured_simple

1 

mir359 
Superfamily of mir359 
hairpin

structured_simple

1 

mir36 
Superfamily of mir36 
hairpin

structured_simple

3 

mir360 
Superfamily of mir360 
hairpin

structured_simple

1 

mir361 
Superfamily of mir361 
hairpin

structured_simple

1 

mir365 
Superfamily of mir365 
hairpin

structured_simple

1 

mir367 
Superfamily of mir367 
hairpin

structured_simple

1 

mir370 
Superfamily of mir370 
hairpin

structured_simple

1 

mir374 
Superfamily of mir374 
hairpin

structured_simple

1 

mir375 
Superfamily of mir375 
hairpin

structured_simple

1 

mir378 
Superfamily of mir378 
hairpin

structured_simple

1 

mir383 
Superfamily of mir383 
hairpin

structured_simple

1 

mir384 
Superfamily of mir384 
hairpin

structured_simple

1 

mir392 
Superfamily of mir392 
hairpin

structured_simple

1 

mir393 
Superfamily of mir393 
hairpin

structured_simple

1 

MIR396 
Superfamily of MIR396 
hairpin

structured_simple

1 

MIR405 
Superfamily of MIR405 
hairpin

structured_simple

1 

mir412 
Superfamily of mir412 
hairpin

structured_simple

1 

mir422 
Superfamily of mir422 
hairpin

structured_simple

1 

mir423 
Superfamily of mir423 
hairpin

structured_simple

1 

mir425 
Superfamily of mir425 
hairpin

structured_simple

1 

mir43 
Superfamily of mir43 
hairpin

structured_simple

1 

mir431 
Superfamily of mir431 
hairpin

structured_simple

1 

mir432 
Superfamily of mir432 
hairpin

structured_simple

1 

mir433 
Superfamily of mir433 
hairpin

structured_simple

1 

mir434 
Superfamily of mir434 
hairpin

structured_simple

1 

MIR439 
Superfamily of MIR439 
hairpin

structured_simple

1 

mir44 
Superfamily of mir44 
hairpin

structured_simple

1 

mir448 
Superfamily of mir448 
hairpin

structured_simple

1 

mir450 
Superfamily of mir450 
hairpin

structured_simple

1 

mir451 
Superfamily of mir451 
hairpin

structured_simple

1 

mir452 
Superfamily of mir452 
hairpin

structured_simple

1 

mir454 
Superfamily of mir454 
hairpin

structured_simple

1 

mir455 
Superfamily of mir455 
hairpin

structured_simple

1 

mir456 
Superfamily of mir456 
hairpin

structured_simple

1 

mir458 
Superfamily of mir458 
hairpin

structured_simple

1 

mir46 
Superfamily of mir46 
hairpin

structured_simple

1 

mir460 
Superfamily of mir460 
hairpin

structured_simple

1 

mir463 
Superfamily of mir463 
hairpin

structured_simple

1 

mir471 
Superfamily of mir471 
hairpin

structured_simple

1 

MIR476 
Superfamily of MIR476 
hairpin

structured_simple

1 

MIR478 
Superfamily of MIR478 
hairpin

structured_simple

1 

mir48 
Superfamily of mir48 
hairpin

structured_simple

1 

mir484 
Superfamily of mir484 
hairpin

structured_simple

1 

mir486 
Superfamily of mir486 
hairpin

structured_simple

1 

mir488 
Superfamily of mir488 
hairpin

structured_simple

1 

mir489 
Superfamily of mir489 
hairpin

structured_simple

1 

mir49 
Superfamily of mir49 
hairpin

structured_simple

1 

mir490 
Superfamily of mir490 
hairpin

structured_simple

1 

mir491 
Superfamily of mir491 
hairpin

structured_simple

1 

mir492 
Superfamily of mir492 
hairpin

structured_simple

1 

mir497 
Superfamily of mir497 
hairpin

structured_simple

1 

mir498 
Superfamily of mir498 
hairpin

structured_simple

1 

mir499 
Superfamily of mir499 
hairpin

structured_simple

1 

mir5 
Superfamily of mir5 
hairpin

structured_simple

1 

mir50 
Superfamily of mir50 
hairpin

structured_simple

2 

mir500 
Superfamily of mir500 
hairpin

structured_simple

1 

mir503 
Superfamily of mir503 
hairpin

structured_simple

1 

mir504 
Superfamily of mir504 
hairpin

structured_simple

1 

mir505 
Superfamily of mir505 
hairpin

structured_simple

1 

mir506 
Superfamily of mir506 
hairpin

structured_simple

1 

mir52 
Superfamily of mir52 
hairpin

structured_simple

1 

MIR535 
Superfamily of MIR535 
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structured_simple

1 

mir540 
Superfamily of mir540 
hairpin

structured_simple

1 

mir541 
Superfamily of mir541 
hairpin

structured_simple

1 

mir542 
Superfamily of mir542 
hairpin

structured_simple

1 

mir548 
Superfamily of mir548 
hairpin

structured_simple

1 

mir549 
Superfamily of mir549 
hairpin

structured_simple

1 

mir55 
Superfamily of mir55 
hairpin

structured_simple

1 

mir550 
Superfamily of mir550 
hairpin

structured_simple

1 

mir551 
Superfamily of mir551 
hairpin

structured_simple

1 

mir552 
Superfamily of mir552 
hairpin

structured_simple

1 

mir553 
Superfamily of mir553 
hairpin

structured_simple

1 

mir554 
Superfamily of mir554 
hairpin

structured_simple

1 

mir556 
Superfamily of mir556 
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structured_simple

1 

mir557 
Superfamily of mir557 
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structured_simple

1 

mir558 
Superfamily of mir558 
hairpin

structured_simple

1 

mir56 
Superfamily of mir56 
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structured_simple

1 

mir562 
Superfamily of mir562 
hairpin

structured_simple

1 

mir563 
Superfamily of mir563 
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structured_simple

1 

mir567 
Superfamily of mir567 
hairpin

structured_simple

1 

mir569 
Superfamily of mir569 
hairpin

structured_simple

1 

mir572 
Superfamily of mir572 
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structured_simple

1 

mir573 
Superfamily of mir573 
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structured_simple

1 

mir574 
Superfamily of mir574 
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structured_simple

1 

mir575 
Superfamily of mir575 
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structured_simple

1 

mir576 
Superfamily of mir576 
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structured_simple

1 

mir577 
Superfamily of mir577 
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structured_simple

1 

mir578 
Superfamily of mir578 
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structured_simple

1 

mir58 
Superfamily of mir58 
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structured_simple

1 

mir580 
Superfamily of mir580 
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structured_simple

1 

mir581 
Superfamily of mir581 
hairpin

structured_simple

1 

mir582 
Superfamily of mir582 
hairpin

structured_simple

1 

mir583 
Superfamily of mir583 
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structured_simple

1 

mir586 
Superfamily of mir586 
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structured_simple

1 

mir589 
Superfamily of mir589 
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structured_simple

1 

mir590 
Superfamily of mir590 
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structured_simple

1 

mir592 
Superfamily of mir592 
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structured_simple

1 

mir593 
Superfamily of mir593 
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structured_simple

1 

mir597 
Superfamily of mir597 
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structured_simple

1 

mir598 
Superfamily of mir598 
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structured_simple

1 

mir599 
Superfamily of mir599 
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structured_simple

1 

mir60 
Superfamily of mir60 
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structured_simple

1 

mir600 
Superfamily of mir600 
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structured_simple

1 

mir601 
Superfamily of mir601 
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structured_simple

1 

mir604 
Superfamily of mir604 
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structured_simple

1 

mir605 
Superfamily of mir605 
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structured_simple

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mir607 
Superfamily of mir607 
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structured_simple

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Superfamily of mir609 
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structured_simple

1 

mir61 
Superfamily of mir61 
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structured_simple

1 

mir611 
Superfamily of mir611 
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structured_simple

1 

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Superfamily of mir612 
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structured_simple

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Superfamily of mir615 
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Superfamily of mir616 
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structured_simple

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Superfamily of mir618 
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Superfamily of mir62 
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Superfamily of mir621 
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structured_simple

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Superfamily of mir624 
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Superfamily of mir626 
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Superfamily of mir628 
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Superfamily of mir63 
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structured_simple

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Superfamily of mir631 
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Superfamily of mir632 
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Superfamily of mir633 
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Superfamily of mir636 
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Superfamily of mir638 
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Superfamily of mir639 
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structured_simple

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Superfamily of mir64 
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Superfamily of mir640 
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Superfamily of mir642 
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Superfamily of mir643 
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structured_simple

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Superfamily of mir644 
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structured_simple

1 

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Superfamily of mir648 
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structured_simple

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Superfamily of mir650 
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structured_simple

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mir651 
Superfamily of mir651 
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structured_simple

1 

mir652 
Superfamily of mir652 
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structured_simple

1 

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Superfamily of mir653 
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structured_simple

1 

mir654 
Superfamily of mir654 
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structured_simple

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Superfamily of mir657 
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structured_simple

1 

mir661 
Superfamily of mir661 
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structured_simple

1 

mir662 
Superfamily of mir662 
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structured_simple

1 

mir663 
Superfamily of mir663 
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structured_simple

1 

mir665 
Superfamily of mir665 
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structured_simple

1 

mir668 
Superfamily of mir668 
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structured_simple

1 

mir67 
Superfamily of mir67 
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structured_simple

1 

mir671 
Superfamily of mir671 
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structured_simple

1 

mir672 
Superfamily of mir672 
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structured_simple

1 

mir673 
Superfamily of mir673 
hairpin

structured_simple

1 

mir674 
Superfamily of mir674 
hairpin

structured_simple

1 

mir675 
Superfamily of mir675 
hairpin

structured_simple

1 

mir676 
Superfamily of mir676 
hairpin

structured_simple

1 

mir684 
Superfamily of mir684 
hairpin

structured_simple

1 

mir692 
Superfamily of mir692 
hairpin

structured_simple

1 

mir7 
Superfamily of mir7 
hairpin

structured_simple

1 

mir70 
Superfamily of mir70 
hairpin

structured_simple

1 

mir71 
Superfamily of mir71 
hairpin

structured_simple

1 

mir711 
Superfamily of mir711 
hairpin

structured_simple

1 

mir720 
Superfamily of mir720 
hairpin

structured_simple

1 

mir73 
Superfamily of mir73 
hairpin

structured_simple

2 

mir744 
Superfamily of mir744 
hairpin

structured_simple

1 

mir75 
Superfamily of mir75 
hairpin

structured_simple

1 

mir760 
Superfamily of mir760 
hairpin

structured_simple

1 

mir761 
Superfamily of mir761 
hairpin

structured_simple

1 

mir764 
Superfamily of mir764 
hairpin

structured_simple

1 

mir765 
Superfamily of mir765 
hairpin

structured_simple

1 

mir767 
Superfamily of mir767 
hairpin

structured_simple

1 

mir77 
Superfamily of mir77 
hairpin

structured_simple

1 

mir770 
Superfamily of mir770 
hairpin

structured_simple

1 

mir785 
Superfamily of mir785 
hairpin

structured_simple

1 

mir786 
Superfamily of mir786 
hairpin

structured_simple

1 

mir787 
Superfamily of mir787 
hairpin

structured_simple

1 

mir788 
Superfamily of mir788 
hairpin

structured_simple

1 

mir789 
Superfamily of mir789 
hairpin

structured_simple

1 

mir790 
Superfamily of mir790 
hairpin

structured_simple

1 

mir791 
Superfamily of mir791 
hairpin

structured_simple

1 

mir8 
Superfamily of mir8 
hairpin

structured_simple

1 

mir80 
Superfamily of mir80 
hairpin

structured_simple

1 

mir802 
Superfamily of mir802 
hairpin

structured_simple

1 

MIR807 
Superfamily of MIR807 
hairpin

structured_simple

1 

mir81 
Superfamily of mir81 
hairpin

structured_simple

2 

MIR811 
Superfamily of MIR811 
hairpin

structured_simple

1 

MIR815 
Superfamily of MIR815 
hairpin

structured_simple

1 

MIR820 
Superfamily of MIR820 
hairpin

structured_simple

1 

MIR821 
Superfamily of MIR821 
hairpin

structured_simple

1 

MIR824 
Superfamily of MIR824 
hairpin

structured_simple

1 

MIR828 
Superfamily of MIR828 
hairpin

structured_simple

1 

mir83 
Superfamily of mir83 
hairpin

structured_simple

1 

mir84 
Superfamily of mir84 
hairpin

structured_simple

1 

MIR845_1 
Superfamily of MIR845_1 
hairpin

structured_simple

1 

MIR845_2 
Superfamily of MIR845_2 
hairpin

structured_simple

1 

mir85 
Superfamily of mir85 
hairpin

structured_simple

1 

MIR854 
Superfamily of MIR854 
hairpin

structured_simple

1 

mir86 
Superfamily of mir86 
hairpin

structured_simple

1 

mir87 
Superfamily of mir87 
hairpin

structured_simple

1 

mir872 
Superfamily of mir872 
hairpin

structured_simple

2 

mir874 
Superfamily of mir874 
hairpin

structured_simple

1 

mir875 
Superfamily of mir875 
hairpin

structured_simple

1 

mir876 
Superfamily of mir876 
hairpin

structured_simple

1 

mir877 
Superfamily of mir877 
hairpin

structured_simple

1 

mir879 
Superfamily of mir879 
hairpin

structured_simple

1 

mir883 
Superfamily of mir883 
hairpin

structured_simple

1 

mir885 
Superfamily of mir885 
hairpin

structured_simple

1 

mir887 
Superfamily of mir887 
hairpin

structured_simple

1 

mir891 
Superfamily of mir891 
hairpin

structured_simple

1 

mir9 
Superfamily of mir9 
hairpin

structured_simple

1 

mir90 
Superfamily of mir90 
hairpin

structured_simple

1 

mir92 
Superfamily of mir92 
hairpin

structured_simple

1 

mir920 
Superfamily of mir920 
hairpin

structured_simple

1 

mir922 
Superfamily of mir922 
hairpin

structured_simple

1 

mir924 
Superfamily of mir924 
hairpin

structured_simple

1 

mir927 
Superfamily of mir927 
hairpin

structured_simple

1 

mir929 
Superfamily of mir929 
hairpin

structured_simple

1 

mir932 
Superfamily of mir932 
hairpin

structured_simple

1 

mir934 
Superfamily of mir934 
hairpin

structured_simple

1 

mir936 
Superfamily of mir936 
hairpin

structured_simple

1 

mir937 
Superfamily of mir937 
hairpin

structured_simple

1 

mir938 
Superfamily of mir938 
hairpin

structured_simple

1 

mir939 
Superfamily of mir939 
hairpin

structured_simple

1 

mir940 
Superfamily of mir940 
hairpin

structured_simple

1 

mir941 
Superfamily of mir941 
hairpin

structured_simple

1 

mir942 
Superfamily of mir942 
hairpin

structured_simple

1 

mir944 
Superfamily of mir944 
hairpin

structured_simple

1 

mir96 
Superfamily of mir96 
hairpin

structured_simple

1 

mir965 
Superfamily of mir965 
hairpin

structured_simple

1 

mir969 
Superfamily of mir969 
hairpin

structured_simple

1 

mir981 
Superfamily of mir981 
hairpin

structured_simple

1 

mir983 
Superfamily of mir983 
hairpin

structured_simple

1 

mir987 
Superfamily of mir987 
hairpin

structured_simple

1 

mir988 
Superfamily of mir988 
hairpin

structured_simple

1 

mir995 
Superfamily of mir995 
hairpin

structured_simple

1 

mir999 
Superfamily of mir999 
hairpin

structured_simple

1 

mirBART 
Superfamily of mirBART 
hairpin

structured_simple

2 

mirBART12 
Superfamily of mirBART12 
hairpin

structured_simple

1 

mirBART15 
Superfamily of mirBART15 
hairpin

structured_simple

1 

mirBART17 
Superfamily of mirBART17 
hairpin

structured_simple

1 

mirBART2 
Superfamily of mirBART2 
hairpin

structured_simple

1 

mirBART20 
Superfamily of mirBART20 
hairpin

structured_simple

1 

mirBART5 
Superfamily of mirBART5 
hairpin

structured_simple

1 

mirBART7 
Superfamily of mirBART7 
hairpin

structured_simple

1 

mirBHRF11 
Superfamily of mirBHRF11 
hairpin

structured_simple

1 

mirBHRF12 
Superfamily of mirBHRF12 
hairpin

structured_simple

1 

mirBHRF13 
Superfamily of mirBHRF13 
hairpin

structured_simple

1 

miriab3 
Superfamily of miriab3 
hairpin

structured_simple

1 

mirM7 
Superfamily of mirM7 
hairpin

structured_simple

1 

miRNA1 
Superfamily of miRNA1 
hairpin

structured_simple

39 

miRNA2 
Superfamily of miRNA2 
hairpin

structured_simple

428 

mirTAR 
Superfamily of mirTAR 
hairpin

structured_simple

1 

MNV_3UTR 
Superfamily of MNV_3UTR 
3H

structured_simple

1 

MocoII 
Superfamily of MocoII 
hairpin

structured_simple

1 

MOCO_RNA_motif 
Superfamily of MOCO_RNA_motif 
complex unclassified

structured_complex

1 

MOSES4 
Superfamily of MOSES4 
4WJ

structured_simple

1 

MPMV_package 
Superfamily of MPMV_package 
complex unclassified

structured_complex

1 

mraW 
Superfamily of mraW 
hairpin

structured_simple

1 

Ms1 
Superfamily of Ms1 
complex unclassified

structured_complex

1 

MS2 
Superfamily of MS2 
hairpin

structured_simple

1 

Ms_AS1 
Superfamily of Ms_AS1 
3H

structured_simple

1 

Ms_AS4 
Superfamily of Ms_AS4 
2H

structured_simple

1 

Ms_AS5 
Superfamily of Ms_AS5 
hairpin

structured_simple

1 

Ms_AS8 
Superfamily of Ms_AS8 
2H

structured_simple

1 

Ms_IGR2 
Superfamily of Ms_IGR2 
2H

structured_simple

1 

Ms_IGR4 
Superfamily of Ms_IGR4 
hairpin

structured_simple

1 

Ms_IGR5 
Superfamily of Ms_IGR5 
3H

structured_simple

1 

Ms_IGR7 
Superfamily of Ms_IGR7 
2H

structured_simple

1 

Ms_IGR8 
Superfamily of Ms_IGR8 
hairpin

structured_simple

1 

msiK 
Superfamily of msiK 
hairpin

structured_simple

1 

msr 
Superfamily of msr 
hairpin

structured_simple

1 

mtDNA_ssA 
Superfamily of mtDNA_ssA 
4WJ

structured_simple

1 

MtlS 
Superfamily of MtlS 
3WJ

structured_simple

1 

mycoplasma_FSE 
Superfamily of mycoplasma_FSE 
hairpin

structured_simple

1 

naRNA3 
Superfamily of naRNA3 
2H

structured_simple

1 

NBR2 
Superfamily of NBR2 
hairpin

structured_simple

1 

ncr1015 
Superfamily of ncr1015 
2H

structured_simple

1 

ncr1175 
Superfamily of ncr1175 
2H

structured_simple

1 

ncr1241 
Superfamily of ncr1241 
2H

structured_simple

1 

ncr1575 
Superfamily of ncr1575 
3H

structured_simple

1 

ncr952 
Superfamily of ncr952 
4H

structured_simple

1 

ncr982 
Superfamily of ncr982 
2H

structured_simple

1 

ncrMT1302 
Superfamily of ncrMT1302 
3WJ

structured_simple

1 

NCRUPAR_1 
Superfamily of NCRUPAR_1 
hairpin

structured_simple

1 

NCRUPAR_2 
Superfamily of NCRUPAR_2 
2H

structured_simple

1 

ncRv12659 
Superfamily of ncRv12659 
3H

structured_simple

1 

Ncrwmel02 
Superfamily of Ncrwmel02 
complex unclassified

structured_complex

1 

NEAT1_1 
Superfamily of NEAT1_1 
4WJ

structured_simple

1 

NEAT1_2 
Superfamily of NEAT1_2 
3H

structured_simple

1 

NEAT1_3 
Superfamily of NEAT1_3 
multiple_domains

structured_complex

1 

neisseria_FSE 
Superfamily of neisseria_FSE 
hairpin

structured_simple

1 

NiCo 
Superfamily of NiCo 
4WJ

structured_simple

1 

Noro_CRE 
Superfamily of Noro_CRE 
hairpin

structured_simple

1 

nos_TCE 
Superfamily of nos_TCE 
3WJ

structured_simple

1 

NPPAAS1_1 
Superfamily of NPPAAS1_1 
multiple_domains

structured_complex

1 

NPPAAS1_2 
Superfamily of NPPAAS1_2 
multiple_domains

structured_complex

1 

NPPAAS1_3 
Superfamily of NPPAAS1_3 
3WJ

structured_simple

1 

NRF2_IRES 
Superfamily of NRF2_IRES 
4H

structured_simple

1 

NRON 
Superfamily of NRON 
complex unclassified

structured_complex

1 

NrrF 
Superfamily of NrrF 
2H

structured_simple

1 

NrsZ 
Superfamily of NrsZ 
complex unclassified

structured_complex

1 

nse_sRNA 
Superfamily of nse_sRNA 
2H

structured_simple

1 

NsiR1 
Superfamily of NsiR1 
2H

structured_simple

1 

NsiR4 
Superfamily of NsiR4 
2H

structured_simple

1 

NsiR8 
Superfamily of NsiR8 
3H

structured_simple

1 

NsiR9 
Superfamily of NsiR9 
3H

structured_simple

1 

nuoG 
Superfamily of nuoG 
hairpin

structured_simple

1 

OceanV 
Superfamily of OceanV 
2H

structured_simple

1 

ODC_IRES 
Superfamily of ODC_IRES 
2H

structured_simple

1 

ohsC_RNA 
Superfamily of ohsC_RNA 
2H

structured_simple

1 

OLE 
Superfamily of OLE 
complex unclassified

structured_complex

1 

OmrAB 
Superfamily of OmrAB 
2H

structured_simple

1 

OppA_thermometer 
Superfamily of OppA_thermometer 
complex unclassified

structured_complex

1 

OrzOP 
Superfamily of OrzOP 
2H

structured_simple

1 

Oskar_OES 
Superfamily of Oskar_OES 
hairpin

structured_simple

1 

ovine_lenti_FSE 
Superfamily of ovine_lenti_FSE 
complex unclassified

structured_complex

1 

OxyS 
Superfamily of OxyS 
3H

structured_simple

1 

P1 
Superfamily of P1 
2H

structured_simple

1 

P10 
Superfamily of P10 
3WJ

structured_simple

1 

P11 
Superfamily of P11 
4WJ

structured_simple

1 

P13 
Superfamily of P13 
3H

structured_simple

1 

P14 
Superfamily of P14 
3H

structured_simple

1 

P15 
Superfamily of P15 
4H

structured_simple

1 

P16 
Superfamily of P16 
3WJ

structured_simple

1 

P17 
Superfamily of P17 
complex unclassified

structured_complex

1 

P18 
Superfamily of P18 
3WJ

structured_simple

1 

P2 
Superfamily of P2 
3WJ

structured_simple

1 

P24 
Superfamily of P24 
complex unclassified

structured_complex

1 

P26 
Superfamily of P26 
2H

structured_simple

1 

P27 
Superfamily of P27 
4WJ

structured_simple

1 

p27_CRE 
Superfamily of p27_CRE 
2H

structured_simple

1 

P31 
Superfamily of P31 
2H

structured_simple

1 

P33 
Superfamily of P33 
complex unclassified

structured_complex

1 

P34 
Superfamily of P34 
complex unclassified

structured_complex

1 

P35 
Superfamily of P35 
2H

structured_simple

1 

P36 
Superfamily of P36 
2H

structured_simple

1 

P37 
Superfamily of P37 
2H

structured_simple

1 

P4 
Superfamily of P4 
complex unclassified

structured_complex

1 

P5 
Superfamily of P5 
3H

structured_simple

1 

P6 
Superfamily of P6 
complex unclassified

structured_complex

1 

P8 
Superfamily of P8 
2H

structured_simple

1 

P9 
Superfamily of P9 
2H

structured_simple

1 

pan 
Superfamily of pan 
2H

structured_simple

1 

Parecho_CRE 
Superfamily of Parecho_CRE 
complex unclassified

structured_complex

1 

PART1_1 
Superfamily of PART1_1 
3H

structured_simple

1 

PART1_2 
Superfamily of PART1_2 
complex unclassified

structured_complex

1 

PART1_3 
Superfamily of PART1_3 
3H

structured_simple

1 

PCA3_2 
Superfamily of PCA3_2 
complex unclassified

structured_complex

1 

PCGEM1 
Superfamily of PCGEM1 
multiple_domains

structured_complex

1 

Pedorepair 
Superfamily of Pedorepair 
complex unclassified

structured_complex

1 

PepN_thermometer 
Superfamily of PepN_thermometer 
2H

structured_simple

1 

pfl 
Superfamily of pfl 
3WJ

structured_simple

1 

Phage_pRNA 
Superfamily of Phage_pRNA 
complex unclassified

structured_complex

1 

Phe_leader 
Superfamily of Phe_leader 
hairpin

structured_simple

1 

PhotoRCI 
Superfamily of PhotoRCI 
2H

structured_simple

1 

PhotoRCII 
Superfamily of PhotoRCII 
2H

structured_simple

1 

PhrS 
Superfamily of PhrS 
complex unclassified

structured_complex

1 

Pinc 
Superfamily of Pinc 
multiple_domains

structured_complex

1 

PinT 
Superfamily of PinT 
2H

structured_simple

1 

PISRT1 
Superfamily of PISRT1 
2H

structured_simple

1 

Pistol 
Superfamily of Pistol 
complex unclassified

structured_complex

1 

PK1TEV_CVMV 
Superfamily of PK1TEV_CVMV 
pseudoknot_simple

structured_simple

1 

PKBYV 
Superfamily of PKBYV 
pseudoknot_simple

structured_simple

1 

PKCuYV_BPYV 
Superfamily of PKCuYV_BPYV 
complex unclassified

structured_complex

1 

PKHAV 
Superfamily of PKHAV 
pseudoknot_simple

structured_simple

1 

PKIAV 
Superfamily of PKIAV 
pseudoknot_simple

structured_simple

1 

PKPYVV 
Superfamily of PKPYVV 
complex unclassified

structured_complex

1 

PKrepBA 
Superfamily of PKrepBA 
hairpin

structured_simple

1 

PKrepZ 
Superfamily of PKrepZ 
pseudoknot_simple

structured_simple

1 

PKSPCSV 
Superfamily of PKSPCSV 
complex unclassified

structured_complex

1 

Plasmid_R1162 
Superfamily of Plasmid_R1162 
2H

structured_simple

1 

Plasmid_RNAIII 
Superfamily of Plasmid_RNAIII 
4H

structured_simple

1 

pntA 
Superfamily of pntA 
2H

structured_simple

1 

Polynucleobacter1 
Superfamily of Polynucleobacter1 
complex unclassified

structured_complex

1 

Pospi_RY 
Superfamily of Pospi_RY 
hairpin

structured_simple

1 

potC 
Superfamily of potC 
hairpin

structured_simple

1 

Pox_AX_element 
Superfamily of Pox_AX_element 
2H

structured_simple

1 

PreQ1 
Superfamily of PreQ1 
hairpin

structured_simple

1 

preQ1II 
Superfamily of preQ1II 
3H

structured_simple

1 

PreQ1III 
Superfamily of PreQ1III 
3WJ

structured_simple

1 

PrfA 
Superfamily of PrfA 
hairpin

structured_simple

1 

Prion_pknot 
Superfamily of Prion_pknot 
hairpin

structured_simple

1 

pRNA 
Superfamily of pRNA 
hairpin

structured_simple

1 

PrrF 
Superfamily of PrrF 
4H

structured_simple

1 

psaA 
Superfamily of psaA 
complex unclassified

structured_complex

1 

psbNH 
Superfamily of psbNH 
hairpin

structured_simple

1 

Pseudomon1 
Superfamily of Pseudomon1 
2H

structured_simple

1 

PseudomongroES 
Superfamily of PseudomongroES 
complex unclassified

structured_complex

1 

PseudomonRho 
Superfamily of PseudomonRho 
2H

structured_simple

1 

psm_mec_RNA 
Superfamily of psm_mec_RNA 
2H

structured_simple

1 

psRNA14 
Superfamily of psRNA14 
3WJ

structured_simple

1 

psRNA2 
Superfamily of psRNA2 
complex unclassified

structured_complex

1 

psRNA6 
Superfamily of psRNA6 
complex unclassified

structured_complex

1 

PsrR1 
Superfamily of PsrR1 
hairpin

structured_simple

1 

PtaRNA1 
Superfamily of PtaRNA1 
2H

structured_simple

1 

purD 
Superfamily of purD 
2H

structured_simple

1 

Purine 
Superfamily of Purine 
3WJ

structured_simple

1 

PutA_thermometer 
Superfamily of PutA_thermometer 
3H

structured_simple

1 

PVT1_1 
Superfamily of PVT1_1 
complex unclassified

structured_complex

1 

PVT1_2 
Superfamily of PVT1_2 
complex unclassified

structured_complex

1 

PVT1_3 
Superfamily of PVT1_3 
3H

structured_simple

1 

PVT1_4 
Superfamily of PVT1_4 
complex unclassified

structured_complex

1 

PVT1_5 
Superfamily of PVT1_5 
2H

structured_simple

1 

PVT1_6 
Superfamily of PVT1_6 
3WJ

structured_simple

1 

PVT1_7 
Superfamily of PVT1_7 
3H

structured_simple

1 

PVX_3 
Superfamily of PVX_3 
2H

structured_simple

1 

Pxr 
Superfamily of Pxr 
3H

structured_simple

1 

PYLIS_1 
Superfamily of PYLIS_1 
hairpin

structured_simple

1 

PYLIS_2 
Superfamily of PYLIS_2 
2H

structured_simple

1 

PYLIS_3 
Superfamily of PYLIS_3 
4H

structured_simple

1 

PYLIS_4 
Superfamily of PYLIS_4 
2H

structured_simple

1 

PYLIS_5 
Superfamily of PYLIS_5 
2H

structured_simple

1 

PYLIS_6 
Superfamily of PYLIS_6 
hairpin

structured_simple

1 

PyrC_leader 
Superfamily of PyrC_leader 
hairpin

structured_simple

1 

PyrD_leader 
Superfamily of PyrD_leader 
hairpin

structured_simple

1 

PyrG_leader 
Superfamily of PyrG_leader 
hairpin

structured_simple

1 

Pyrobac1 
Superfamily of Pyrobac1 
hairpin

structured_simple

1 

PyrR 
Superfamily of PyrR 
3H

structured_simple

1 

Qrr 
Superfamily of Qrr 
3H

structured_simple

1 

R2_retro_el 
Superfamily of R2_retro_el 
3WJ

structured_simple

1 

radC 
Superfamily of radC 
4H

structured_simple

1 

RAGATH13 
Superfamily of RAGATH13 
3WJ

structured_simple

1 

RAGATH5 
Superfamily of RAGATH5 
pseudoknot_simple

structured_simple

1 

RAGATH6 
Superfamily of RAGATH6 
complex unclassified

structured_complex

1 

RAGATH8 
Superfamily of RAGATH8 
complex unclassified

structured_complex

1 

RalA 
Superfamily of RalA 
complex unclassified

structured_complex

1 

RatA 
Superfamily of RatA 
2H

structured_simple

1 

RCNMV_5UTR 
Superfamily of RCNMV_5UTR 
4H

structured_simple

1 

RCNMV_TE_DR1 
Superfamily of RCNMV_TE_DR1 
complex unclassified

structured_complex

1 

RcsR1 
Superfamily of RcsR1 
3H

structured_simple

1 

rdlD 
Superfamily of rdlD 
hairpin

structured_simple

1 

RENSRE 
Superfamily of RENSRE 
hairpin

structured_simple

1 

Retro_dr1 
Superfamily of Retro_dr1 
2H

structured_simple

1 

Rev11 
Superfamily of Rev11 
complex unclassified

structured_complex

1 

Rev13 
Superfamily of Rev13 
complex unclassified

structured_complex

1 

Rev24 
Superfamily of Rev24 
complex unclassified

structured_complex

1 

Rev39_5p_UTR 
Superfamily of Rev39_5p_UTR 
complex unclassified

structured_complex

1 

Rev41 
Superfamily of Rev41 
complex unclassified

structured_complex

1 

Rev42_5p_UTR 
Superfamily of Rev42_5p_UTR 
complex unclassified

structured_complex

1 

Rev44 
Superfamily of Rev44 
complex unclassified

structured_complex

1 

Rev72 
Superfamily of Rev72 
complex unclassified

structured_complex

1 

RFPL3AS1_1 
Superfamily of RFPL3AS1_1 
3WJ

structured_simple

1 

RFPL3AS1_2 
Superfamily of RFPL3AS1_2 
2H

structured_simple

1 

RF_site1 
Superfamily of RF_site1 
hairpin

structured_simple

1 

RF_site2 
Superfamily of RF_site2 
pseudoknot_simple

structured_simple

1 

RF_site3 
Superfamily of RF_site3 
pseudoknot_simple

structured_simple

1 

RF_site4 
Superfamily of RF_site4 
pseudoknot_simple

structured_simple

1 

RF_site5 
Superfamily of RF_site5 
pseudoknot_simple

structured_simple

1 

RF_site6 
Superfamily of RF_site6 
pseudoknot_simple

structured_simple

1 

RF_site8 
Superfamily of RF_site8 
pseudoknot_simple

structured_simple

1 

RF_site9 
Superfamily of RF_site9 
pseudoknot_simple

structured_simple

1 

Rhino_CRE 
Superfamily of Rhino_CRE 
hairpin

structured_simple

1 

Rhizobiales2 
Superfamily of Rhizobiales2 
3H

structured_simple

1 

RhlA_thermometer 
Superfamily of RhlA_thermometer 
3WJ

structured_simple

1 

rhtB 
Superfamily of rhtB 
hairpin

structured_simple

1 

Ricks_sRNA10 
Superfamily of Ricks_sRNA10 
complex unclassified

structured_complex

1 

rimP 
Superfamily of rimP 
2H

structured_simple

1 

rivX 
Superfamily of rivX 
complex unclassified

structured_complex

1 

rli22 
Superfamily of rli22 
2H

structured_simple

1 

rli23 
Superfamily of rli23 
3WJ

structured_simple

1 

rli24 
Superfamily of rli24 
complex unclassified

structured_complex

1 

rli26 
Superfamily of rli26 
complex unclassified

structured_complex

1 

rli27 
Superfamily of rli27 
3WJ

structured_simple

1 

rli28 
Superfamily of rli28 
3WJ

structured_simple

1 

rli31 
Superfamily of rli31 
hairpin

structured_simple

1 

rli32 
Superfamily of rli32 
complex unclassified

structured_complex

1 

rli33 
Superfamily of rli33 
complex unclassified

structured_complex

1 

rli34 
Superfamily of rli34 
2H

structured_simple

1 

rli36 
Superfamily of rli36 
2H

structured_simple

1 

rli37 
Superfamily of rli37 
complex unclassified

structured_complex

1 

rli38 
Superfamily of rli38 
3WJ

structured_simple

1 

rli40 
Superfamily of rli40 
complex unclassified

structured_complex

1 

rli41 
Superfamily of rli41 
complex unclassified

structured_complex

1 

rli42 
Superfamily of rli42 
complex unclassified

structured_complex

1 

rli43 
Superfamily of rli43 
complex unclassified

structured_complex

1 

rli45 
Superfamily of rli45 
3WJ

structured_simple

1 

rli47 
Superfamily of rli47 
complex unclassified

structured_complex

1 

rli48 
Superfamily of rli48 
3WJ

structured_simple

1 

rli49 
Superfamily of rli49 
3WJ

structured_simple

1 

rli51 
Superfamily of rli51 
3WJ

structured_simple

1 

rli52 
Superfamily of rli52 
3H

structured_simple

1 

rli53 
Superfamily of rli53 
3WJ

structured_simple

1 

rli54 
Superfamily of rli54 
complex unclassified

structured_complex

1 

rli56 
Superfamily of rli56 
3WJ

structured_simple

1 

rli59 
Superfamily of rli59 
3WJ

structured_simple

1 

rli60 
Superfamily of rli60 
3WJ

structured_simple

1 

rli61 
Superfamily of rli61 
2H

structured_simple

1 

rli62 
Superfamily of rli62 
complex unclassified

structured_complex

1 

rliA 
Superfamily of rliA 
complex unclassified

structured_complex

1 

rliB 
Superfamily of rliB 
3WJ

structured_simple

1 

rliD 
Superfamily of rliD 
complex unclassified

structured_complex

1 

rliE 
Superfamily of rliE 
complex unclassified

structured_complex

1 

rliF 
Superfamily of rliF 
complex unclassified

structured_complex

1 

rliG 
Superfamily of rliG 
complex unclassified

structured_complex

1 

rliH 
Superfamily of rliH 
complex unclassified

structured_complex

1 

rliI 
Superfamily of rliI 
complex unclassified

structured_complex

1 

RmaA 
Superfamily of RmaA 
2H

structured_simple

1 

rmf 
Superfamily of rmf 
4H

structured_simple

1 

RMST_1 
Superfamily of RMST_1 
hairpin

structured_simple

1 

RMST_10 
Superfamily of RMST_10 
3H

structured_simple

1 

RMST_2 
Superfamily of RMST_2 
complex unclassified

structured_complex

1 

RMST_3 
Superfamily of RMST_3 
hairpin

structured_simple

1 

RMST_4 
Superfamily of RMST_4 
2H

structured_simple

1 

RMST_5 
Superfamily of RMST_5 
4H

structured_simple

1 

RMST_6 
Superfamily of RMST_6 
complex unclassified

structured_complex

1 

RMST_7 
Superfamily of RMST_7 
complex unclassified

structured_complex

1 

RMST_8 
Superfamily of RMST_8 
3H

structured_simple

1 

RMST_9 
Superfamily of RMST_9 
multiple_domains

structured_complex

1 

RnaG 
Superfamily of RnaG 
4WJ

structured_simple

1 

RNAI 
Superfamily of RNAI 
3H

structured_simple

1 

RNAIII 
Superfamily of RNAIII 
complex unclassified

structured_complex

1 

RNAOUT 
Superfamily of RNAOUT 
hairpin

structured_simple

1 

RNaseP 
Superfamily of RNaseP 
RNaseP

structured_complex

7 

rncO 
Superfamily of rncO 
3H

structured_simple

1 

rne5 
Superfamily of rne5 
complex unclassified

structured_complex

1 

rneII 
Superfamily of rneII 
complex unclassified

structured_complex

1 

rnk_leader 
Superfamily of rnk_leader 
2H

structured_simple

1 

rnk_pseudo 
Superfamily of rnk_pseudo 
2H

structured_simple

1 

ROSE 
Superfamily of ROSE 
3H

structured_simple

1 

ROSE_2 
Superfamily of ROSE_2 
2H

structured_simple

1 

ROSE_3 
Superfamily of ROSE_3 
2H

structured_simple

1 

Rota_CRE 
Superfamily of Rota_CRE 
hairpin

structured_simple

1 

rox1 
Superfamily of rox1 
hairpin

structured_simple

1 

rox2 
Superfamily of rox2 
hairpin

structured_simple

1 

RprA 
Superfamily of RprA 
4H

structured_simple

1 

rpsB 
Superfamily of rpsB 
3WJ

structured_simple

1 

rpsL_psuedo 
Superfamily of rpsL_psuedo 
4H

structured_simple

1 

rpsL_ricks 
Superfamily of rpsL_ricks 
3H

structured_simple

1 

RRE 
Superfamily of RRE 
complex unclassified

structured_complex

1 

RsaA 
Superfamily of RsaA 
3H

structured_simple

1 

RsaB 
Superfamily of RsaB 
3H

structured_simple

1 

RsaC 
Superfamily of RsaC 
complex unclassified

structured_complex

1 

RsaD 
Superfamily of RsaD 
4H

structured_simple

1 

RsaE 
Superfamily of RsaE 
3H

structured_simple

1 

RsaF 
Superfamily of RsaF 
3H

structured_simple

1 

RsaH 
Superfamily of RsaH 
complex unclassified

structured_complex

1 

RsaJ 
Superfamily of RsaJ 
complex unclassified

structured_complex

1 

RsaOG 
Superfamily of RsaOG 
complex unclassified

structured_complex

1 

rseX 
Superfamily of rseX 
2H

structured_simple

1 

rspL 
Superfamily of rspL 
3WJ

structured_simple

1 

RSV_PBS 
Superfamily of RSV_PBS 
hairpin

structured_simple

1 

RSV_RNA 
Superfamily of RSV_RNA 
complex unclassified

structured_complex

1 

RtT 
Superfamily of RtT 
3WJ

structured_simple

1 

Rubella_3 
Superfamily of Rubella_3 
2H

structured_simple

1 

RUF1 
Superfamily of RUF1 
complex unclassified

structured_complex

1 

RUF2 
Superfamily of RUF2 
2H

structured_simple

1 

RUF20 
Superfamily of RUF20 
complex unclassified

structured_complex

1 

RUF21 
Superfamily of RUF21 
complex unclassified

structured_complex

1 

RUF3 
Superfamily of RUF3 
3WJ

structured_simple

1 

RUF4 
Superfamily of RUF4 
complex unclassified

structured_complex

1 

RUF65 
Superfamily of RUF65 
3WJ

structured_simple

1 

RybB 
Superfamily of RybB 
hairpin

structured_simple

1 

rydB 
Superfamily of rydB 
3WJ

structured_simple

1 

RydC 
Superfamily of RydC 
pseudoknot_simple

structured_simple

1 

RyeARyeB 
Superfamily of RyeARyeB 
3H

structured_simple

2 

ryfA 
Superfamily of ryfA 
complex unclassified

structured_complex

1 

RyhB 
Superfamily of RyhB 
2H

structured_simple

1 

S15 
Superfamily of S15 
2H

structured_simple

1 

s2m 
Superfamily of s2m 
hairpin

structured_simple

1 

sagA 
Superfamily of sagA 
complex unclassified

structured_complex

1 

SAH_riboswitch 
Superfamily of SAH_riboswitch 
hairpin

structured_simple

1 

SAM 
Superfamily of SAM 
3WJ

structured_simple

3 

SAM_alpha 
Superfamily of SAM_alpha 
hairpin

structured_simple

1 

SAMChlorobi 
Superfamily of SAMChlorobi 
2H

structured_simple

1 

SAMII_long_loops 
Superfamily of SAMII_long_loops 
pseudoknot_simple

structured_simple

1 

SAMSAH 
Superfamily of SAMSAH 
hairpin

structured_simple

1 

SAM_V 
Superfamily of SAM_V 
hairpin

structured_simple

1 

sar 
Superfamily of sar 
2H

structured_simple

1 

SAR11_0636 
Superfamily of SAR11_0636 
3WJ

structured_simple

1 

satBaMV_CRE 
Superfamily of satBaMV_CRE 
4WJ

structured_simple

1 

sau13 
Superfamily of sau13 
3WJ

structured_simple

1 

sau19 
Superfamily of sau19 
hairpin

structured_simple

1 

sau27 
Superfamily of sau27 
2H

structured_simple

1 

sau30 
Superfamily of sau30 
hairpin

structured_simple

1 

sau31 
Superfamily of sau31 
hairpin

structured_simple

1 

sau41 
Superfamily of sau41 
3WJ

structured_simple

1 

sau53 
Superfamily of sau53 
complex unclassified

structured_complex

1 

sau59 
Superfamily of sau59 
3WJ

structured_simple

1 

sau5949 
Superfamily of sau5949 
hairpin

structured_simple

1 

sau5971 
Superfamily of sau5971 
3H

structured_simple

1 

sau6072 
Superfamily of sau6072 
2H

structured_simple

1 

sau63 
Superfamily of sau63 
4H

structured_simple

1 

sau66 
Superfamily of sau66 
3WJ

structured_simple

1 

sbcD 
Superfamily of sbcD 
complex unclassified

structured_complex

1 

sbrA 
Superfamily of sbrA 
2H

structured_simple

1 

SBRMV1_UPDPKd 
Superfamily of SBRMV1_UPDPKd 
pseudoknot_simple

structured_simple

1 

SBRMV1_UPDPKf 
Superfamily of SBRMV1_UPDPKf 
pseudoknot_simple

structured_simple

1 

SBWMV1_UPDPKb 
Superfamily of SBWMV1_UPDPKb 
pseudoknot_simple

structured_simple

1 

SBWMV1_UPDPKe 
Superfamily of SBWMV1_UPDPKe 
pseudoknot_simple

structured_simple

1 

SBWMV1_UPDPKh 
Superfamily of SBWMV1_UPDPKh 
pseudoknot_simple

structured_simple

1 

SBWMV2_UPDPKb 
Superfamily of SBWMV2_UPDPKb 
pseudoknot_simple

structured_simple

1 

SBWMV2_UPDPKk 
Superfamily of SBWMV2_UPDPKk 
pseudoknot_simple

structured_simple

1 

SBWMV2_UPDPKl 
Superfamily of SBWMV2_UPDPKl 
pseudoknot_simple

structured_simple

1 

scr4676 
Superfamily of scr4676 
complex unclassified

structured_complex

1 

scr5238 
Superfamily of scr5238 
complex unclassified

structured_complex

1 

SECIS_1 
Superfamily of SECIS_1 
hairpin

structured_simple

1 

SECIS_2 
Superfamily of SECIS_2 
hairpin

structured_simple

1 

SECIS_3 
Superfamily of SECIS_3 
hairpin

structured_simple

1 

SECIS_4 
Superfamily of SECIS_4 
hairpin

structured_simple

1 

SECIS_5 
Superfamily of SECIS_5 
hairpin

structured_simple

1 

Selement 
Superfamily of Selement 
hairpin

structured_simple

1 

serC 
Superfamily of serC 
2H

structured_simple

1 

Sernc350 
Superfamily of Sernc350 
complex unclassified

structured_complex

1 

Sernc389 
Superfamily of Sernc389 
complex unclassified

structured_complex

1 

SgrS 
Superfamily of SgrS 
complex unclassified

structured_complex

1 

shuA_thermo 
Superfamily of shuA_thermo 
hairpin

structured_simple

1 

SIB_RNA 
Superfamily of SIB_RNA 
4WJ

structured_simple

1 

Six3os1_1 
Superfamily of Six3os1_1 
3WJ

structured_simple

1 

Six3os1_2 
Superfamily of Six3os1_2 
3WJ

structured_simple

1 

Six3os1_3 
Superfamily of Six3os1_3 
2H

structured_simple

1 

Six3os1_4 
Superfamily of Six3os1_4 
multiple_domains

structured_complex

1 

Six3os1_5 
Superfamily of Six3os1_5 
complex unclassified

structured_complex

1 

Six3os1_6 
Superfamily of Six3os1_6 
3WJ

structured_simple

1 

Six3os1_7 
Superfamily of Six3os1_7 
complex unclassified

structured_complex

1 

SL 
Superfamily of SL 
3H

structured_simple

2 

SMAD5AS1_1 
Superfamily of SMAD5AS1_1 
complex unclassified

structured_complex

1 

SMAD5AS1_2 
Superfamily of SMAD5AS1_2 
complex unclassified

structured_complex

1 

SMAD5AS1_3 
Superfamily of SMAD5AS1_3 
3WJ

structured_simple

1 

SMAD5AS1_4 
Superfamily of SMAD5AS1_4 
4WJ

structured_simple

1 

SMCR2_1 
Superfamily of SMCR2_1 
complex unclassified

structured_complex

1 

SMCR2_2 
Superfamily of SMCR2_2 
complex unclassified

structured_complex

1 

SMK_box_riboswitch 
Superfamily of SMK_box_riboswitch 
3WJ

structured_simple

1 

SmY 
Superfamily of SmY 
2H

structured_simple

1 

snaRA 
Superfamily of snaRA 
hairpin

structured_simple

1 

sobemo_FSE 
Superfamily of sobemo_FSE 
hairpin

structured_simple

1 

SodB_thermometer 
Superfamily of SodB_thermometer 
2H

structured_simple

1 

SodC_thermometer 
Superfamily of SodC_thermometer 
3WJ

structured_simple

1 

sok 
Superfamily of sok 
2H

structured_simple

1 

SorY 
Superfamily of SorY 
3H

structured_simple

1 

sot0042 
Superfamily of sot0042 
complex unclassified

structured_complex

1 

sot2652 
Superfamily of sot2652 
complex unclassified

structured_complex

1 

SOX2OT_exon1 
Superfamily of SOX2OT_exon1 
complex unclassified

structured_complex

1 

SOX2OT_exon2 
Superfamily of SOX2OT_exon2 
2H

structured_simple

1 

SOX2OT_exon3 
Superfamily of SOX2OT_exon3 
complex unclassified

structured_complex

1 

SOX2OT_exon4 
Superfamily of SOX2OT_exon4 
4H

structured_simple

1 

Spdsr07 
Superfamily of Spdsr07 
hairpin

structured_simple

1 

Spdsr37 
Superfamily of Spdsr37 
hairpin

structured_simple

1 

speF 
Superfamily of speF 
complex unclassified

structured_complex

1 

SpF01_sRNA 
Superfamily of SpF01_sRNA 
hairpin

structured_simple

1 

SpF03_sRNA 
Superfamily of SpF03_sRNA 
3WJ

structured_simple

1 

SpF10_sRNA 
Superfamily of SpF10_sRNA 
3WJ

structured_simple

1 

SpF11_sRNA 
Superfamily of SpF11_sRNA 
2H

structured_simple

1 

SpF14_sRNA 
Superfamily of SpF14_sRNA 
3WJ

structured_simple

1 

SpF19_sRNA 
Superfamily of SpF19_sRNA 
3WJ

structured_simple

1 

SpF22_sRNA 
Superfamily of SpF22_sRNA 
3WJ

structured_simple

1 

SpF25_sRNA 
Superfamily of SpF25_sRNA 
2H

structured_simple

1 

SpF36_sRNA 
Superfamily of SpF36_sRNA 
hairpin

structured_simple

1 

SpF39_sRNA 
Superfamily of SpF39_sRNA 
2H

structured_simple

1 

SpF41_sRNA 
Superfamily of SpF41_sRNA 
3WJ

structured_simple

1 

SpF43_sRNA 
Superfamily of SpF43_sRNA 
hairpin

structured_simple

1 

SpF44_sRNA 
Superfamily of SpF44_sRNA 
3WJ

structured_simple

1 

SpF51_sRNA 
Superfamily of SpF51_sRNA 
2H

structured_simple

1 

SpF56_sRNA 
Superfamily of SpF56_sRNA 
hairpin

structured_simple

1 

SpF59_sRNA 
Superfamily of SpF59_sRNA 
4WJ

structured_simple

1 

SpF61_sRNA 
Superfamily of SpF61_sRNA 
hairpin

structured_simple

1 

SpF66_sRNA 
Superfamily of SpF66_sRNA 
complex unclassified

structured_complex

1 

Sphinx_1 
Superfamily of Sphinx_1 
complex unclassified

structured_complex

1 

Sphinx_2 
Superfamily of Sphinx_2 
multiple_domains

structured_complex

1 

Spi1 
Superfamily of Spi1 
complex unclassified

structured_complex

1 

Spot_42 
Superfamily of Spot_42 
3H

structured_simple

1 

SpR08_sRNA 
Superfamily of SpR08_sRNA 
2H

structured_simple

1 

SpR10_sRNA 
Superfamily of SpR10_sRNA 
hairpin

structured_simple

1 

SpR14_sRNA 
Superfamily of SpR14_sRNA 
hairpin

structured_simple

1 

SpR18_sRNA 
Superfamily of SpR18_sRNA 
3WJ

structured_simple

1 

SpR19_sRNA 
Superfamily of SpR19_sRNA 
3WJ

structured_simple

1 

SpR20_sRNA 
Superfamily of SpR20_sRNA 
2H

structured_simple

1 

SprD 
Superfamily of SprD 
4H

structured_simple

1 

SprX 
Superfamily of SprX 
complex unclassified

structured_complex

1 

SPRY4IT1_1 
Superfamily of SPRY4IT1_1 
3WJ

structured_simple

1 

SPRY4IT1_2 
Superfamily of SPRY4IT1_2 
complex unclassified

structured_complex

1 

Spy1186876 
Superfamily of Spy1186876 
4H

structured_simple

1 

Spy1786666 
Superfamily of Spy1786666 
2H

structured_simple

1 

Spy392987 
Superfamily of Spy392987 
hairpin

structured_simple

1 

Spy490380c 
Superfamily of Spy490380c 
3H

structured_simple

1 

Spy490483c 
Superfamily of Spy490483c 
2H

structured_simple

1 

Spy491311c 
Superfamily of Spy491311c 
3WJ

structured_simple

1 

Spy491738 
Superfamily of Spy491738 
3H

structured_simple

1 

Spy779816 
Superfamily of Spy779816 
2H

structured_simple

1 

sR035 
Superfamily of sR035 
complex unclassified

structured_complex

1 

sR084 
Superfamily of sR084 
2H

structured_simple

1 

SR1 
Superfamily of SR1 
3H

structured_simple

1 

sraA 
Superfamily of sraA 
2H

structured_simple

1 

SraB 
Superfamily of SraB 
4H

structured_simple

1 

SraG 
Superfamily of SraG 
3H

structured_simple

1 

sraL 
Superfamily of sraL 
complex unclassified

structured_complex

1 

srg1 
Superfamily of srg1 
complex unclassified

structured_complex

1 

sRNAXcc1 
Superfamily of sRNAXcc1 
3WJ

structured_simple

1 

sroB 
Superfamily of sroB 
3H

structured_simple

1 

sroC 
Superfamily of sroC 
3WJ

structured_simple

1 

sroD 
Superfamily of sroD 
2H

structured_simple

1 

sroE 
Superfamily of sroE 
2H

structured_simple

1 

sroH 
Superfamily of sroH 
hairpin

structured_simple

1 

SRP 
Superfamily of SRP 
SRP

structured_complex

8 

SscA 
Superfamily of SscA 
hairpin

structured_simple

1 

Ssr1 
Superfamily of Ssr1 
complex unclassified

structured_complex

1 

SSRC29 
Superfamily of SSRC29 
complex unclassified

structured_complex

1 

SSRC34_1 
Superfamily of SSRC34_1 
2H

structured_simple

1 

SSRC34_2 
Superfamily of SSRC34_2 
2H

structured_simple

1 

SSRC38 
Superfamily of SSRC38 
complex unclassified

structured_complex

1 

SSRC41 
Superfamily of SSRC41 
2H

structured_simple

1 

SSRC8_1 
Superfamily of SSRC8_1 
3WJ

structured_simple

1 

SSRC8_2 
Superfamily of SSRC8_2 
complex unclassified

structured_complex

1 

SSRC9 
Superfamily of SSRC9 
3H

structured_simple

1 

SSU_rRNA 
Superfamily of SSU_rRNA 
rRNA

structured_complex

5 

ST7AS1_1 
Superfamily of ST7AS1_1 
hairpin

structured_simple

1 

ST7AS1_2 
Superfamily of ST7AS1_2 
3WJ

structured_simple

1 

ST7AS2_1 
Superfamily of ST7AS2_1 
hairpin

structured_simple

1 

ST7AS2_2 
Superfamily of ST7AS2_2 
2H

structured_simple

1 

ST7OT3_1 
Superfamily of ST7OT3_1 
hairpin

structured_simple

1 

ST7OT3_2 
Superfamily of ST7OT3_2 
2H

structured_simple

1 

ST7OT3_3 
Superfamily of ST7OT3_3 
hairpin

structured_simple

1 

ST7OT3_4 
Superfamily of ST7OT3_4 
hairpin

structured_simple

1 

ST7OT4_1 
Superfamily of ST7OT4_1 
complex unclassified

structured_complex

1 

ST7OT4_2 
Superfamily of ST7OT4_2 
3WJ

structured_simple

1 

ST7OT4_3 
Superfamily of ST7OT4_3 
multiple_domains

structured_complex

1 

ST7OT4_4 
Superfamily of ST7OT4_4 
3WJ

structured_simple

1 

STAXI 
Superfamily of STAXI 
4H

structured_simple

1 

STnc100 
Superfamily of STnc100 
complex unclassified

structured_complex

1 

STnc130 
Superfamily of STnc130 
2H

structured_simple

1 

STnc150 
Superfamily of STnc150 
3H

structured_simple

1 

STnc170 
Superfamily of STnc170 
complex unclassified

structured_complex

1 

STnc180 
Superfamily of STnc180 
4H

structured_simple

1 

STnc210 
Superfamily of STnc210 
3WJ

structured_simple

1 

STnc220 
Superfamily of STnc220 
3WJ

structured_simple

1 

STnc230 
Superfamily of STnc230 
hairpin

structured_simple

1 

STnc240 
Superfamily of STnc240 
2H

structured_simple

1 

STnc250 
Superfamily of STnc250 
4H

structured_simple

1 

STnc260 
Superfamily of STnc260 
3WJ

structured_simple

1 

STnc280 
Superfamily of STnc280 
2H

structured_simple

1 

STnc290 
Superfamily of STnc290 
2H

structured_simple

1 

STnc30 
Superfamily of STnc30 
complex unclassified

structured_complex

1 

STnc300 
Superfamily of STnc300 
4H

structured_simple

1 

STnc310 
Superfamily of STnc310 
2H

structured_simple

1 

STnc320 
Superfamily of STnc320 
hairpin

structured_simple

1 

STnc340 
Superfamily of STnc340 
2H

structured_simple

1 

STnc350 
Superfamily of STnc350 
2H

structured_simple

1 

STnc361 
Superfamily of STnc361 
complex unclassified

structured_complex

1 

STnc370 
Superfamily of STnc370 
2H

structured_simple

1 

STnc380 
Superfamily of STnc380 
2H

structured_simple

1 

STnc390 
Superfamily of STnc390 
2H

structured_simple

1 

STnc40 
Superfamily of STnc40 
2H

structured_simple

1 

STnc400 
Superfamily of STnc400 
2H

structured_simple

1 

STnc410 
Superfamily of STnc410 
3H

structured_simple

1 

STnc420 
Superfamily of STnc420 
hairpin

structured_simple

1 

STnc430 
Superfamily of STnc430 
3H

structured_simple

1 

STnc450 
Superfamily of STnc450 
2H

structured_simple

1 

STnc460 
Superfamily of STnc460 
4H

structured_simple

1 

STnc470 
Superfamily of STnc470 
complex unclassified

structured_complex

1 

STnc480 
Superfamily of STnc480 
hairpin

structured_simple

1 

STnc490 
Superfamily of STnc490 
3H

structured_simple

1 

STnc50 
Superfamily of STnc50 
2H

structured_simple

1 

STnc500 
Superfamily of STnc500 
complex unclassified

structured_complex

1 

STnc510 
Superfamily of STnc510 
complex unclassified

structured_complex

1 

STnc540 
Superfamily of STnc540 
3WJ

structured_simple

1 

STnc550 
Superfamily of STnc550 
complex unclassified

structured_complex

1 

STnc560 
Superfamily of STnc560 
4H

structured_simple

1 

STnc590 
Superfamily of STnc590 
complex unclassified

structured_complex

1 

STnc630 
Superfamily of STnc630 
complex unclassified

structured_complex

1 

STnc70 
Superfamily of STnc70 
3H

structured_simple

1 

StyR143 
Superfamily of StyR143 
4H

structured_simple

1 

StyR3 
Superfamily of StyR3 
3WJ

structured_simple

1 

StyR44 
Superfamily of StyR44 
2H

structured_simple

1 

sucA 
Superfamily of sucA 
4WJ

structured_simple

1 

sucAII 
Superfamily of sucAII 
complex unclassified

structured_complex

1 

sucC 
Superfamily of sucC 
hairpin

structured_simple

1 

suhB 
Superfamily of suhB 
2H

structured_simple

2 

SurA 
Superfamily of SurA 
complex unclassified

structured_complex

1 

SurC 
Superfamily of SurC 
3WJ

structured_simple

1 

sX1 
Superfamily of sX1 
3WJ

structured_simple

1 

sX10 
Superfamily of sX10 
complex unclassified

structured_complex

1 

sX12 
Superfamily of sX12 
2H

structured_simple

1 

sX13 
Superfamily of sX13 
4H

structured_simple

1 

sX14 
Superfamily of sX14 
4H

structured_simple

1 

sX3 
Superfamily of sX3 
complex unclassified

structured_complex

1 

sX4 
Superfamily of sX4 
hairpin

structured_simple

1 

sX5 
Superfamily of sX5 
complex unclassified

structured_complex

1 

sX7 
Superfamily of sX7 
3H

structured_simple

1 

sX8 
Superfamily of sX8 
2H

structured_simple

1 

sX9 
Superfamily of sX9 
3H

structured_simple

1 

sxy 
Superfamily of sxy 
3WJ

structured_simple

1 

symR 
Superfamily of symR 
2H

structured_simple

1 

t43 
Superfamily of t43 
hairpin

structured_simple

1 

TarA 
Superfamily of TarA 
3H

structured_simple

1 

TarB 
Superfamily of TarB 
4H

structured_simple

1 

Tbox 
Superfamily of Tbox 
complex unclassified

structured_complex

1 

TCL6_1 
Superfamily of TCL6_1 
2H

structured_simple

1 

TCL6_2 
Superfamily of TCL6_2 
2H

structured_simple

1 

TCL6_3 
Superfamily of TCL6_3 
multiple_domains

structured_complex

1 

TCV_H4 
Superfamily of TCV_H4 
hairpin

structured_simple

1 

TCV_H5 
Superfamily of TCV_H5 
hairpin

structured_simple

1 

TCV_Pr 
Superfamily of TCV_Pr 
hairpin

structured_simple

1 

Teg22 
Superfamily of Teg22 
complex unclassified

structured_complex

1 

Teg48 
Superfamily of Teg48 
4WJ

structured_simple

1 

Telomerase 
Superfamily of Telomerase 
telomerase

structured_complex

4 

TeloSII_ncR29 
Superfamily of TeloSII_ncR29 
3WJ

structured_simple

1 

TeloSII_ncR32 
Superfamily of TeloSII_ncR32 
4WJ

structured_simple

1 

TeloSII_ncR39 
Superfamily of TeloSII_ncR39 
3WJ

structured_simple

1 

TeloSII_ncR42 
Superfamily of TeloSII_ncR42 
complex unclassified

structured_complex

1 

TeloSII_ncR45 
Superfamily of TeloSII_ncR45 
hairpin

structured_simple

1 

TeloSII_ncR49 
Superfamily of TeloSII_ncR49 
hairpin

structured_simple

1 

Termiteflg 
Superfamily of Termiteflg 
2H

structured_simple

1 

Termiteleu 
Superfamily of Termiteleu 
2H

structured_simple

1 

tfoR 
Superfamily of tfoR 
4H

structured_simple

1 

THF 
Superfamily of THF 
complex unclassified

structured_complex

1 

Thr_leader 
Superfamily of Thr_leader 
2H

structured_simple

1 

TMV_UPDPK1 
Superfamily of TMV_UPDPK1 
pseudoknot_simple

structured_simple

1 

TMV_UPDPK3 
Superfamily of TMV_UPDPK3 
pseudoknot_simple

structured_simple

1 

Toga_5_CRE 
Superfamily of Toga_5_CRE 
complex unclassified

structured_complex

1 

toga_FSE 
Superfamily of toga_FSE 
hairpin

structured_simple

1 

Tombus_3_III 
Superfamily of Tombus_3_III 
2H

structured_simple

1 

Tombus_3_IV 
Superfamily of Tombus_3_IV 
complex unclassified

structured_complex

1 

Tombus_4 
Superfamily of Tombus_4 
complex unclassified

structured_complex

1 

Tombus_IRE 
Superfamily of Tombus_IRE 
hairpin

structured_simple

1 

ToxI 
Superfamily of ToxI 
hairpin

structured_simple

1 

ToxT_thermometer 
Superfamily of ToxT_thermometer 
hairpin

structured_simple

1 

tp1 
Superfamily of tp1 
hairpin

structured_simple

1 

TP53TG1_1 
Superfamily of TP53TG1_1 
3WJ

structured_simple

1 

TP53TG1_2 
Superfamily of TP53TG1_2 
4WJ

structured_simple

1 

TP73AS1 
Superfamily of TP73AS1 
complex unclassified

structured_complex

1 

tpke10 
Superfamily of tpke10 
2H

structured_simple

1 

TPP 
Superfamily of TPP 
complex unclassified

structured_complex

1 

tracrRNA 
Superfamily of tracrRNA 
hairpin

structured_simple

1 

traJII 
Superfamily of traJII 
3WJ

structured_simple

1 

Trans44_sRNA 
Superfamily of Trans44_sRNA 
4H

structured_simple

1 

tRNA 
Superfamily of tRNA 
tRNAlike

structured_simple

15 

Trp_leader 
Superfamily of Trp_leader 
2H

structured_simple

1 

Trp_leader_1 
Superfamily of Trp_leader_1 
2H

structured_simple

1 

TrxA_thermometer 
Superfamily of TrxA_thermometer 
2H

structured_simple

1 

tsr0 
Superfamily of tsr0 
complex unclassified

structured_complex

1 

tsr23 
Superfamily of tsr23 
complex unclassified

structured_complex

1 

tsr24 
Superfamily of tsr24 
4H

structured_simple

1 

tsr26 
Superfamily of tsr26 
4WJ

structured_simple

1 

tsr31 
Superfamily of tsr31 
2H

structured_simple

1 

tsr32 
Superfamily of tsr32 
4WJ

structured_simple

1 

tsr33 
Superfamily of tsr33 
2H

structured_simple

1 

TTC28AS1_1 
Superfamily of TTC28AS1_1 
complex unclassified

structured_complex

1 

TTC28AS1_2 
Superfamily of TTC28AS1_2 
3WJ

structured_simple

1 

TTC28AS1_3 
Superfamily of TTC28AS1_3 
3WJ

structured_simple

1 

TTC28AS1_4 
Superfamily of TTC28AS1_4 
3WJ

structured_simple

1 

TUG1_1 
Superfamily of TUG1_1 
hairpin

structured_simple

1 

TUG1_2 
Superfamily of TUG1_2 
2H

structured_simple

1 

TUG1_3 
Superfamily of TUG1_3 
complex unclassified

structured_complex

1 

TUG1_4 
Superfamily of TUG1_4 
complex unclassified

structured_complex

1 

TUSC7 
Superfamily of TUSC7 


1 

TwisterP4 
Superfamily of TwisterP4 
complex unclassified

structured_complex

1 

Twistersister 
Superfamily of Twistersister 
4WJ

structured_simple

1 

U1 
Superfamily of U1 
U1_snRNA

structured_complex

4 

U1A_PIE 
Superfamily of U1A_PIE 
hairpin

structured_simple

1 

U2 
Superfamily of U2 
Intron_gpIIlike

structured_complex

3 

U4 
Superfamily of U4 
U4_snRNA

structured_complex

3 

U5 
Superfamily of U5 
Intron_gpIIlike

structured_complex

1 

U6 
Superfamily of U6 
Intron_gpIIlike

structured_complex

3 

U7 
Superfamily of U7 
hairpin

structured_simple

1 

uc_337 
Superfamily of uc_337 
3WJ

structured_simple

1 

UCA1 
Superfamily of UCA1 
3WJ

structured_simple

1 

UnaL1 
Superfamily of UnaL1 
hairpin

structured_simple

1 

UPDPK1 
Superfamily of UPDPK1 
pseudoknot_simple

structured_simple

1 

UPDPKc 
Superfamily of UPDPKc 
pseudoknot_simple

structured_simple

1 

UPDPKib 
Superfamily of UPDPKib 
pseudoknot_simple

structured_simple

1 

UPSK 
Superfamily of UPSK 
pseudoknot_simple

structured_simple

1 

UptR 
Superfamily of UptR 
3H

structured_simple

1 

URE2_IRES 
Superfamily of URE2_IRES 
hairpin

structured_simple

1 

VA 
Superfamily of VA 
3WJ

structured_simple

1 

Va906 
Superfamily of Va906 
complex unclassified

structured_complex

1 

Vault 
Superfamily of Vault 
hairpin

structured_simple

1 

Vax2os1_1 
Superfamily of Vax2os1_1 
3WJ

structured_simple

1 

Vax2os1_2 
Superfamily of Vax2os1_2 
complex unclassified

structured_complex

1 

Vax2os1_3 
Superfamily of Vax2os1_3 
complex unclassified

structured_complex

1 

veev_FSE 
Superfamily of veev_FSE 
hairpin

structured_simple

1 

Vg1_ribozyme 
Superfamily of Vg1_ribozyme 
complex unclassified

structured_complex

1 

Vimentin2 
Superfamily of Vimentin2 
3WJ

structured_simple

1 

Virus_CITE_1 
Superfamily of Virus_CITE_1 
4WJ

structured_simple

1 

Virus_CITE_2 
Superfamily of Virus_CITE_2 
3WJ

structured_simple

1 

Virus_CITE_3 
Superfamily of Virus_CITE_3 
3WJ

structured_simple

1 

Virus_CITE_4 
Superfamily of Virus_CITE_4 
3WJ

structured_simple

1 

Virus_CITE_5 
Superfamily of Virus_CITE_5 
hairpin

structured_simple

1 

Virus_CITE_6 
Superfamily of Virus_CITE_6 
3WJ

structured_simple

1 

Virus_CITE_7 
Superfamily of Virus_CITE_7 
3WJ

structured_simple

1 

Virus_CITE_8 
Superfamily of Virus_CITE_8 
3WJ

structured_simple

1 

VIS1 
Superfamily of VIS1 
4H

structured_simple

1 

VrrA 
Superfamily of VrrA 
2H

structured_simple

1 

VRRNA 
Superfamily of VRRNA 
complex unclassified

structured_complex

1 

wcaG 
Superfamily of wcaG 
complex unclassified

structured_complex

1 

weev_FSE 
Superfamily of weev_FSE 
hairpin

structured_simple

1 

whalefall0 
Superfamily of whalefall0 
2H

structured_simple

1 

WLE2 
Superfamily of WLE2 
hairpin

structured_simple

1 

WsnRNA46 
Superfamily of WsnRNA46 
hairpin

structured_simple

1 

WsnRNA59 
Superfamily of WsnRNA59 
hairpin

structured_simple

1 

WT1AS_1 
Superfamily of WT1AS_1 
3H

structured_simple

1 

WT1AS_2 
Superfamily of WT1AS_2 
4WJ

structured_simple

1 

WT1AS_3 
Superfamily of WT1AS_3 
complex unclassified

structured_complex

1 

WT1AS_4 
Superfamily of WT1AS_4 
3WJ

structured_simple

1 

WT1AS_5 
Superfamily of WT1AS_5 
hairpin

structured_simple

1 

WT1AS_6 
Superfamily of WT1AS_6 
3WJ

structured_simple

1 

WT1AS_7 
Superfamily of WT1AS_7 
complex unclassified

structured_complex

1 

WT1AS_8 
Superfamily of WT1AS_8 
3H

structured_simple

1 

X15 
Superfamily of X15 
3WJ

structured_simple

1 

XIST_A_REPEAT 
Superfamily of XIST_A_REPEAT 
2H

structured_simple

1 

Xist_exon1 
Superfamily of Xist_exon1 
3H

structured_simple

1 

Xist_exon4 
Superfamily of Xist_exon4 
hairpin

structured_simple

1 

XIST_intron 
Superfamily of XIST_intron 
hairpin

structured_simple

1 

Xoo0 
Superfamily of Xoo0 
complex unclassified

structured_complex

1 

Xoo1 
Superfamily of Xoo1 
3H

structured_simple

1 

Xoo4 
Superfamily of Xoo4 
3WJ

structured_simple

1 

Xoo7 
Superfamily of Xoo7 
complex unclassified

structured_complex

1 

Yar_1 
Superfamily of Yar_1 
hairpin

structured_simple

1 

Yar_2 
Superfamily of Yar_2 
2H

structured_simple

1 

Yar_3 
Superfamily of Yar_3 
3WJ

structured_simple

1 

ybhL 
Superfamily of ybhL 
hairpin

structured_simple

1 

ydaOyuaA 
Superfamily of ydaOyuaA 
complex unclassified

structured_complex

1 

YenS 
Superfamily of YenS 
complex unclassified

structured_complex

1 

Yfr1 
Superfamily of Yfr1 
2H

structured_simple

1 

Yfr10 
Superfamily of Yfr10 
2H

structured_simple

1 

Yfr11 
Superfamily of Yfr11 
3WJ

structured_simple

1 

Yfr12 
Superfamily of Yfr12 
4H

structured_simple

1 

Yfr17 
Superfamily of Yfr17 
3WJ

structured_simple

1 

Yfr19 
Superfamily of Yfr19 
2H

structured_simple

1 

Yfr20 
Superfamily of Yfr20 
3H
complex unclassified

structured_complex
structured_simple

2 

Yfr7 
Superfamily of Yfr7 
complex unclassified

structured_complex

1 

YFV_3UTR 
Superfamily of YFV_3UTR 
complex unclassified

structured_complex

1 

yjdF 
Superfamily of yjdF 
4WJ

structured_simple

1 

ykkCIII 
Superfamily of ykkCIII 
2H

structured_simple

1 

ykkCyxkD 
Superfamily of ykkCyxkD 
2H

structured_simple

1 

ykoK 
Superfamily of ykoK 
complex unclassified

structured_complex

1 

ylbH 
Superfamily of ylbH 
3H

structured_simple

1 

YrlA 
Superfamily of YrlA 
4WJ

structured_simple

1 

YrlB 
Superfamily of YrlB 
hairpin

structured_simple

1 

Y_RNA 
Superfamily of Y_RNA 
hairpin

structured_simple

1 

Ysr140 
Superfamily of Ysr140 
complex unclassified

structured_complex

1 

Ysr155(RyfD) 
Superfamily of Ysr155(RyfD) 
complex unclassified

structured_complex

1 

Ysr189 
Superfamily of Ysr189 
2H

structured_simple

1 

Ysr201 
Superfamily of Ysr201 
complex unclassified

structured_complex

1 

Ysr208 
Superfamily of Ysr208 
hairpin

structured_simple

1 

Ysr223 
Superfamily of Ysr223 
4WJ

structured_simple

1 

Ysr34 
Superfamily of Ysr34 
complex unclassified

structured_complex

1 

Ysr48 
Superfamily of Ysr48 
4H

structured_simple

1 

yybPykoY 
Superfamily of yybPykoY 
3H

structured_simple

1 

ZEB2_AS1_1 
Superfamily of ZEB2_AS1_1 
3H

structured_simple

1 

ZEB2_AS1_2 
Superfamily of ZEB2_AS1_2 
2H

structured_simple

1 

ZEB2_AS1_3 
Superfamily of ZEB2_AS1_3 
3WJ

structured_simple

1 

ZEB2_AS1_4 
Superfamily of ZEB2_AS1_4 
2H

structured_simple

1 

ZFATAS1_1 
Superfamily of ZFATAS1_1 
3WJ

structured_simple

1 

ZFATAS1_2 
Superfamily of ZFATAS1_2 
4WJ

structured_simple

1 

ZFATAS1_3 
Superfamily of ZFATAS1_3 
4WJ

structured_simple

1 

ZNFX1AS1_1 
Superfamily of ZNFX1AS1_1 
multiple_domains

structured_complex

1 

ZNFX1AS1_2 
Superfamily of ZNFX1AS1_2 
hairpin

structured_simple

1 

ZNFX1AS1_3 
Superfamily of ZNFX1AS1_3 
hairpin

structured_simple

1 

ZNRD1AS1_1 
Superfamily of ZNRD1AS1_1 
hairpin

structured_simple

1 

ZNRD1AS1_2 
Superfamily of ZNRD1AS1_2 
4WJ

structured_simple

1 

ZNRD1AS1_3 
Superfamily of ZNRD1AS1_3 
hairpin

structured_simple

1 
