International institute of molecular and cell biology in Warzawa

Subfamily Intron_gpII-B_CL2


Download the aligments for this family. (.stk)

RNA Shape

Level1
(((())((()(()))(((())))(((()))))((((()(())))))())((()(()))))(())(())(())
Level2
((()((()())()())(()())())(()()))()()()

Consensus Secondary Structure representation

>predicted reference Intron_gpII-B_CL2

GUGCGAUUCGUUGGGCAAGAAACCUGUCAAGGAAACUAAAUAUGGGGAUGACCCACAAGGAUUAAAGGUCAACCUCAAAGGGAACCUAUGAAUAACUUUUAUGAUGUAGGUGACAAGUCCUACCCUCCAGUAUGUCAGGAGUGACAGCAUAUCCCUACGGUAGAGACUGAUCAUCAAGCCGUGAAGCGGGGAUAAAAGGAGGAAUAAGACACAAACUACAUAAGGUACGACACUGCCAAGCAAGGAGUCCAUGGGUAACAAAACGUGAAGUUAUGUCUGAACCGUCGUUAACAUGAAAGCAGCCAAAACAGAGUUAAUAGGCUGCAAUCAAAAGAUCAAAGACAUAGAGAACCAGCAAAUUCAACUAUUUAUCUGUAUAACACCUCCAAGUAAACCCGGCGGAUAGGUAACACCCUAAAUGUAUCAAUAAAUCAUGAUUAACGGAACGAAAUAACCCCUUUAUGCUCUCAGGAAUGGUCGAUAACCUGAGUAGGCAAAGCCAACCAUACGAGCCAUAAAGGGAGAGAUUGAGUAAGAAGCAAAUGCCUAACUGUAAUACCUAGGAUAUGCAGACAGAAUCACGAUAAACUGGAUAAAUUACUAAAUGUAGUUGCUAAAGAAACGGUGUACCUAUGAAAAAGACCAAAUCACUGAGGAGCCGUGUGAGGUGAAAGUCUCACGCACGGUUCUGAAGGAGAGUCGCGGAAGGUGAUACCCUCGCUGACCUCUAAU

..((..((((((.(...............(..........)...........)..(.................................(...............(((((........)))))(((((.........)))).)....).((((((.((((....(.........)...)))).....))).)))...(..((.......(..................)...)..)......................).....).....(((........(((.((..........(........................).............................(((..((........))...))).....................).)))).....)))...((...........................))))))))......(.((((((..((((((............))))))..(.....(....))........)))))))..................)).....((.....)...............).....................................................................................(((((((((((((((....))))))..)))))))))....(........(............)........)......






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