International institute of molecular and cell biology in Warzawa

Subfamily Intron_gpII-B_BactD


Download the aligments for this family. (.stk)

RNA Shape

Level1
((((()(())(((()))())((()(((()(())))))))))(((((()))))))((((())))(()(()))(()))
Level2
((()()(()())(()(()())))())(()(()())())

Consensus Secondary Structure representation

>predicted reference Intron_gpII-B_BactD

GUGUGUCACGAACGCAGGAGAGUAAAGCUGUGUAUGCUGUACAGAAGAUGGGGGUAGGCCCCCCGGAGUCGGCUUGCAGGAGCGGGCUCCAAACCACCCGGUGCUGCUGCGGUCAAAAGCCGUGGUGGUGAGCGACCGGGGAAAAGUCAUCCGAUGAGGGUGUCAGGUGAGUAUCGAGAAGAUGAGCGAAAGCAAACCGCCGAUGACGCAUCGUUAAUGCCAAGAUGCUGUCGAAACCGAGGUUGUGUAGUUGCUUCGGGACAAGCCGGGGCGAUACCUGUUUACGGACCCGGCGGCAGCCGGUGUAUAGGCGGCAUGAUCUCGAUACAGGCUUUUGUACGGAACGUGAGAACCUGUUGCUCCAGUUGUAAGGGAAAAUGACCCAAGUGGCAGACACCACGAGGAAAGAAUACCGAUGCUGGAGUACAGGGGCGGAGCCGCCCGUAGUAGUGAUGAAGUCCCUGUAAUGGGGAUGGAGCGAAGGGGCGGCGUUAUCUUGCUCGAUGCAAUGCGGUCAACCUGCAAAGGGGAUGAGCAGCAUCCGUGAGCCGUAUGACGCGAGAGUGUCACGUACGGUUCUGCGAGAGGCUGGGGGGGAAGUUCCCCCGGUCUACUCACC

..(..((((..........................((((((((((((..(((((.....)))))((((((.((((....)))).))))))..(((.(((((((((((((((((.....))))))))))....).)))))).......((...........))...)))..(((((((((..(((.((....))...(((((......((((((.............((((((....(((((.............))))).....((((((.((...........))..))))))))))))))))))...))))))))..)))))))))...)))))))))))..)))))...(((.....((.........((.........((..(((.......).))..))........)).......))....)))..)((.(((((((......((......((((((.....))))))...))....))))))).........................)..((.......).................((((((((((((((....))))))..)))))))).).(((((((((((((.......)))))))))).)))..)






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