International institute of molecular and cell biology in Warzawa

Subfamily Intron_gpI-IE2


Download the aligments for this family. (.stk)

RNA Shape

Level1
()((()))((()))((((((((())))))(((())))(())())))(()(((())))((())))
Level2
()()()(()()()())(()()())

Consensus Secondary Structure representation

>predicted reference Intron_gpI-IE2

AAGUCUGGUGAAAAUUCAACACUGCUGUUGACGCCAGAGAUAGUAGGGCCGCCCUACAGGGUGUUAUGCCUGCUAGUCGAGCACCCGAAUAAUGUAUGGGUGGGUGCCGGCGAGAUGACCUGGUACGGGGAAGGCCAACGGCUGGGUCUAAUGCUGCUAUGGGUAAUCCCGUGGCGAGCCUGCAAAGGGCGACCUUUGCAGAAGCCGUCGUAACGCACGGAAAGGCAUCGGCCGACUCCUCCGGAGUCGGCUUAAGGGACGUGCUAAUCCCAUCCGAAAGGAUGCCCUAAGCAGGAGCGCCCAUACCGCAAAGGUUCGGGGGGGCAGCGGUGUAUGAGGAAAUGAUACCACUCCCGGUAGUAAAUGGCCAGCAGCCGCGG

...(((((((.....................)))))))..(((((((....(.(......).).....)))))))((.(..(((((...............))))).).))..(.((.(.....(.((.(...((((.((((..........)))).)...)))..).)).)((((.((.(.(.................).)))))))...(....(.....)...).((((((((.......))))))))........))).).((..(((((....)))))(((.((.(....((.........))....)))..)))(((.((..((((...........))))..)))))........))...............






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