Subfamily Intron_gpI-IE1

Download the aligments for this family. (.stk)

RNA Shape

Level1

((((())()(())((((((())))(())(())(()))))(()()()()))))

Level2

(()()()(()()()())(()()()()))

Consensus Secondary Structure representation

>predicted reference Intron_gpI-IE1

AAGUCUGGUGAACGUUGCUGAUGCCAGAAAGAGCCGGGCUCCGGUGCCGGCUAGUCGAGUGCCCGACCAGUGGCAGGGGGCACCGGCGAGACAACCUGGAUCGGGGGAGGCUAAGGGCCCGCAAGGGCCUAUGCUAAUCCCGAGCAGAGCCCCGGCGGGCGACCCGGGGGGCCUGUGUAGAGCGCGCAAAGGUGUCGGUCCCGCUCCUGUCGCGGGGGCUUAAGGGACGUGCCAAUCCCCCGCGAAAGCGGGCCCCUGGGGAGAAGCACCCGCCGGUGCGAAGCCCAGGGGAGGGCCCCCGCAUGGGGCCCGCCCUGUAGGGUAAAAUGGCCAGCAGCC

...(.....(....((...(...)...)...((((((.........)))))).((((.((((((.............))))))))))..(.((.(.....((((((..(((...((..((.....)).))..)))..))))))((((..(((..............)))...))))...(....(.....)...).(((((((.........).))))))........))).).((..(((((....)))))(((((((.........................))))))).((((((.......)))))).((((..))))....)).)).....)..