NPDock docks protein (green) to nucleic acids (red)

Example: Trm14 (cartoon) + tRNA (sticks)

Example: Trm14 (cartoon) + tRNA (cartoon)

NPDock (Nucleic acid-Protein Dock) is a web server for modeling of RNA-protein and DNA-protein complex structures.
It combines (1) GRAMM for global macromolecular docking, (2) scoring with a statistical potential, (3) clustering of best-scored structures, and (4) local refinement.

NPDock – a web server for protein-nucleic acid docking
I Tuszyńska, M Magnus, K Jonak, W Dawson, JM Bujnicki
Nucleic Acid Research (Web Server Issue)

DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking
I Tuszynska, JM Bujnicki
BMC bioinformatics 12 (1), 348

NPDock is maintained by the Laboratory of Bioinformatics and Protein Engineering at International Institute of Molecular and Cell Biology in Warsaw.